RNA id: XM_039814149.1


Basic Information

Item Value
RNA id XM_039814149.1
length 2505
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC120567243
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20099593 ~ 20102097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGATACATTAGATGTAAGGGTGCGAGTTGGATGAGATGGTGTGGTGTGCTTTCTAAACATGGGAAACTAAACGTACGGGTAGATTTGATTTGCTGCAGAAACTggctcctgtgtgtgtatttgttgttgGACAACAATGGGGAGTAAAAGACGATCTCGCTCAAGTGACTATTGTTGGTTTGCTTTTCGTTTTTCCTTACTGCTGATTTTCGGAAAGCAGGTTCTGGCTGAATTGAGATACTCTATTCCAGAGGAGATGAAAGAAGGAACCGTTGTTGGAAATGTTGCTAAGGATCTTGGTCTGGACAAAACCTCTTTAATTGATCGACGATTTCGTGTTGTGTCAGGATCCAAGGACGCTTTTTTCGAGGTAAACACGGACAATGGTGCGTTACAGGTCCGTAAAAAGATCGACAGAGAGGAGCTGTGTCACGGTAGTGGTGCGTGTCTAATGGAGCTGAAAATCCTTGTTGAAAACCCTTTGGAAATGCACCATGTTATAGTAGAAATTACGGATGTAAATGATCACTCCCCCAGTTTTTCTGAAAAGGAACAGCAATTTCAAATATTTGAACATGCATCTCCGGGAACGCGATTCGATCTGCACGCAGCCCGTGATCCGGATGCTGGAAGTAATTCTATTCGTACATATACATTAACATCAAATGATCACTTTGAAATAGATGTTAGTCAAAGTGATGAGGACAAAATACCATTTTTAGTGCTGAAAAAGTCCTTAGACAGAGAACAAAAGAATAAACACGTGCTATTTGTTACAGCAGTTGATGGAGGTAAACCTCACAGATCAGGGACACTAAATGTTTCCATTATAGTTCTTGATATTAATGATAATCGTCCaatgtttagtcaggatacttaCCAAATAGAAATATATGAAAACGTCCCAGTTGGTTCTACTGTTACAAGAGTGAATGCAACAGATCCAGATGAAGGGACCAATGGAGAAATAGAGTACAGCCTTAGCAAAACATTAGCACGTAAAATCTACGAGATATTTGAATTAGATAGTTTAAGTGGACAAATTAAATTGAAAGGGACGTTGGATTTTGAGGAAACGGAGATTTATAAACTAGATGTTCAGGCATCTGACAAAGGAACGCCTCCGCTAATAAGCAGGTGTAAAGTTATAATAAAGATAAAAGACGTTAATGACAATCCACCGGAAATAGAAGTGACATCACTGTCAAATACAGTGTCTGAAGACTCAAAGCCTGGCACAGTTATTTCACTTATTAGTGTGACGGATAAAGACTCTGGTGTCAATGGAAAAATAATATCGAGCATAACGTCAGACGTGCCTTTTGAATTAAAGCCCTCCTATAAGGAGAACATTTATTCAGTTGTCACGAAGGGATTTTTGGATCGAGAGGAGGTGTCACATTatgaaataacaataaaagcCACCGATTGTGGTGAACCTCCCTTATCTACTGTTAAAACTCTCAACATTCAAATATCAGATGTAAATGACAACAGTCCACATTTCGACCAAAATCCAATACAGTTTTATCTGGTAGAAAATAATGTTCCCGGAAATTCAATATTTTCTGTAAGCGCAACAGACAATGATTTGAATGACAATGCAGCTATTTCATACCATATAGTGAGAGGAGGGAgtcaaaatgacataatgtCTTTCCTAAATGTAAATTCTGATAATGGACACATTTCAGCACTAAAGAGTTTTGACTTTGAAACTCTGAAAACGTTCCAGTTCCAAGTTGTTGCCACAGATTCTGGAACTCCGTCACTAAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGCTCCAGTCATCCTGTATCCAGTCAGCTCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACACTTGGTGACTAAAGTCAGAGCCTATGACGCTGATATAGGATATAACGGCTGGTTActgttttcactgcaggacgTTACTGACCACAGTCTCTTTGGTTTGGACCGCTATACAGGACAGATCAGAACACTTCGCTCATTCACAGAGACAGACGAGGCGGAGCATAAACTGGTCATACTGGTGAAAGACAATGGGAACGTTTCACTCTCAGCAACAGCTACTGTGCTTGTCAAAGTTGTGGAGCCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGTGCAACaaaggatgaggaggagaataATGTGACTTTTTACCTGATGATAACTTTGGGCTCagtttcaacactttttctcaTCAGTATCATCGTGCTGATTGCAATGCAGTGCTCCAAAACCACAGActatacttctaaatatctacaagAGACTAATTATGATGGGACACTGTGTCACAGCATCCAGTACAGATCTGGAGACAAACGGTACATGCTAGTAGGACCCAGAATGAGTATAGGATCTACTATAGTCCCGGGCAGCCATGCAAATACACTAGTGCTCCCTGACAGGAGAGGGACATCTGGAGAGGTAAGAGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640570.1 lncRNA upstream 100792 19973785 ~ 19998801 (+) True LOC120567444
XR_005640569.1 lncRNA upstream 100792 19973785 ~ 19998801 (+) False LOC120567444
XR_005640458.1 lncRNA upstream 144630 19950757 ~ 19954963 (+) True LOC120566743
TU142833 lncRNA upstream 157878 19940938 ~ 19941715 (+) True G106351
XR_005640411.1 lncRNA upstream 251315 19844839 ~ 19848278 (+) True LOC120566488
XR_005640536.1 lncRNA downstream 171736 20273833 ~ 20275911 (+) True LOC120567249
TU143143 lncRNA downstream 608412 20710509 ~ 20731673 (+) True G106577
TU143189 lncRNA downstream 844733 20946830 ~ 20947415 (+) False hrh2a
TU143269 lncRNA downstream 998387 21100484 ~ 21100835 (+) True G106679
TU143274 lncRNA downstream 1005401 21107498 ~ 21108359 (+) True G106684
XM_039814148.1 mRNA upstream 1014 20096016 ~ 20098579 (+) True LOC120567242
XM_039813058.1 mRNA upstream 14386 20082373 ~ 20085207 (+) True LOC120566533
XM_039813057.1 mRNA upstream 21224 20075753 ~ 20078369 (+) True LOC120566532
XM_039813056.1 mRNA upstream 24618 20072355 ~ 20074975 (+) True LOC120566530
XM_039814144.1 mRNA upstream 28536 20068463 ~ 20071057 (+) True LOC120567232
XM_039814067.1 mRNA downstream 926 20103023 ~ 20256413 (+) False LOC120567189
XM_039814147.1 mRNA downstream 3826 20105923 ~ 20108462 (+) True LOC120567239
XM_039814059.1 mRNA downstream 6588 20108685 ~ 20256413 (+) False LOC120567189
XM_039814146.1 mRNA downstream 12825 20114922 ~ 20145603 (+) True LOC120567236
XM_039814064.1 mRNA downstream 16047 20118144 ~ 20256413 (+) False LOC120567189
XR_005640374.1 other upstream 38255 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 493820 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 2206063 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 2413894 17682919 ~ 17685699 (+) True G105677
TU141805 other upstream 2739332 17357929 ~ 17360261 (+) False LOC120566324
TU143018 other downstream 249624 20351721 ~ 20352167 (+) True G106465
XR_005640584.1 other downstream 1346707 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 2760093 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 2852875 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 3156174 23258271 ~ 23262229 (+) False tgfb5

Expression Profile