RNA id: XM_039814155.1


Basic Information

Item Value
RNA id XM_039814155.1
length 3392
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120567254
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21220217 ~ 21230375 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTAGAGCAGACGCTGTGCACTGGCTTTGGGGAGAAAAGCTGGTCCGTGCTGGCTCTTTTGCTACACTTATCTGGTGGCCACAATAATTAAAACGTGCTTACGAGTTCATTAAAACGAATGAACTGTATCTCATTGCCACGAGTTAATTAAATCGTGCGAACGAATTGTATCTCGCGGGCACACAATATCATTTCGTGGCCTCAAAATACATCTCTAAAATCTCTGTGATCCTTCCTGGAATCCGTCCAGAACAACTGAGATTGGTAAAGCAGTGTAGGGAATGGGACATTGTGGATAGACAGGTAGTGGGGTACAGGACACACAGAAAACGGTGGTAGAATCAAATGTTTGAAGGAGATAGTACTATTTAGTAGAATTTAGTGGGTTTTGTTTTGAGGACAGAATTCCTGTGATGTAAAGTAGTCTGGTTAGCTACATACTCCGATACAGTAGTGGCGGTATGCATTTTAGGtaatggttgcaacccgccattaaatcaaaagaagaagaagaccctGCTTTCTAGGGATTACGTTCTCGGTGGCTGCAAAGTATAACATGTCTACAGACATGCCGCCGGGCAGTCTGAATGTGGAGTCGCAGCTTTTGTCCATAATGGACGAGCTGGTTAAAGCGGCGGTGGCGGAAATCAGTCAGCTTTTCTCGGTGAGCTCGGCGTCTCTCCGCCTGAATCTAACCCAGAGCCTGAAGGAAAACGAAGCCctgaggatgaggatgaaggTGATGAGGAGCGAGCTCTTCTCTCTCAAGCTGCAGACTAGGACCAACCGACCGGCGAGCCGCTTTTCCCCGATCAGAGGAAGTACACCCAAACCACGGGCTAAACCCCAAGTTGTCATTAAGCCACCAGTGGCTCAAAAGACGGGTGGGGAAGCTGCTTCTATTTCTTTACAATCAGAGAACAAGACTTCTGCCACTCCATTGGAGTGTGCAGGCGGGGAGATCCCAGATGTCATCCTGATCAAAGATGAAGATGACGTCGGAGGATGTGGGCCAGTTGTAGGTCAGAATGACTTTGGAAACCCCAGTATGCAGGGTGATGTTTCTACAGGGACTCAGAATTTAGAGTCCTGCCTGACTAGTGATAATAAGGAGCTGAGAATCGTGAGTGTTCATGGACGAGGGGAAGGGCCTctgcaggaggagagagacaccTTCTTCACTGTCTCTGAACTCCAGGCTTTTAGCTCTCTGTCTCCTGACCATAACGTCATTCATGACAGTCTCCAGAATTTCACCACTGGTGCCAATGACAGAGCCCCGATGAGAGGAATGCAGGATAACAGAAACAGCCAACTGGAACAAAATCATTCCACCCAAATGGCTTCAACAGCATTTAATCCtgcaataaatacacaaatagtAGGAGCTGATGGTCAAGTGGGGCACCCTTGTCTTGTCAGCCAGTTTGCCCAGCAGCAGAATGTCTTCCCTCACAGTGTCAACAAATCTCTGGACTGCAGCTTCTGTGGCGAGCGCTTCCTCAGCCGTGAAGACCTGATTGTGCACAGGGCAAGTCACACCGGAGAATCGCCCGTTCTTTGTACCTTTTGTGGTAAGTCGTTCATCAACAAGAATACACTGGGTATCCACATGCGCATTCACACTGGGGAAAAGCCGTACGCTTGTACGCAATGTGGGAAGCGCTTCACGCAGAACGGCAGCCTGAAGATCCACCTGAGGACCCACTCTGGAGAGAAGCCATACACCTGCAATCAGTGCAGTGCCAGCTTCAACAACCCCAGCAACCTGCGCAGGCACATGACCACACACAACCCTAATGGAGTGCTATGACCAATAAAGATACAAAGTTTGAAGATTAATGTAaagcttttacatttttaagcaTGTTACTTTTACTGACACTTGTGTCAGTGTGTATTCGGGGAATGTGTGTTTCCTCCAGTAGCTTATGTTCTTGTCCTTTTGTGTTTCTAGTTTTGGAACTGCACAGGGAACTTGTCATGCTTCAAATGTACTTGATGAAGTACTACTAGTACACCAGCATATCTTGACAACATTCCAGTAAAATCAATGGACTGTGGTACATTCTTTTTAATTCTAAATAAGCCCCGCCATAGGAAAACAACATTcaaaaatgcctttttatttatctttgccTTTTTTAATACAGTCTGAAAAGCAGACAAACGTATGCCTTATTCATCATTTAAGGaatgaaatatatgaaaatatgcaataccttcataaagaaaaaaaatgactatGACACAACCATCTCTGCAAATTATACAACTGTAGCTCAATGCTAGAGAAGTAATTATTCAATTTGTCGAACCTGTGGTCGCTGGGTCGAGGAGTAAAGCtttatatatgggcgcctgctccaCGAGGTGAGCTACCCCTCAGACGCTATCTTGACTGATTTGACACCATCAACACTTGGAGGAAAGCATTTGCAGGTCAGAGAGGGATGGGGATGGCTAATGGCTGTTTTATAGTAGCCACAGATGCAAATCTGGAAGCTAAAGTGGCCAGAATCATGAACCGTGACATTGAAATAAAGAATAATACAGTTATTGATGGCGTTATGAATTAAACTCAATTGTGTTGTATCACATTAATATTGTGATATAGTAAATACTCAAGAAACTGTTTATCTTAAACACAATTTAAGGCTTGACAAATGAATGTAGGGCTGCtcaattatggaaaaaaaatcataatcacaattattttggtcaatattgaaatcatgatTATTTCACATGATTACTTATTaccttttggaaagatgttgcatttgttgaaataaataaataaaaaacagatcAAAAGTGAAAACTATATAAGAGTGTACTTGCTAAATGTTATGTgcaaaattattgtttttttcaattacattgtttttgtgatctttGGGAGCCGGCATCAAAATTGCGATcaaaacttgaataattgcacagccctacattAAGGTATTCACTTCCAATATTGGCATAAATCAGTCATGCACATTTGTTTGCCCACAGTGGCCTAATGCAGATATTAAAGGGATCACATTTTGTAACTGGTCTGCAAAATCCAGTTATGATATGGTTTGCAAATGTTTGGTATAAATTGGTATATATTGCCATAGTGCCCCACCCTAGGTACAATAAAACATTTACCAGAATGCTAATGTAAAGTGTTCTTGAAAGATTCTCACATCACAACATTGACAAAAATTCCCATGCACTGACTAAGCTTCAGACCTAGATTTATCAATATAAACCTAACTTATTAGGAAGTACAAATGTTTGGCTTAGCCTACTGTTTACTGAGCTGCATACCTGACAAAAGGAGATACACCTTTAACTGTTTTtcatttgtgtgagtgtgttacatttaaaaagcaaattAACTACc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143360 lncRNA downstream 37517 21179985 ~ 21182700 (-) False LOC120566634
XR_005640437.1 lncRNA downstream 56154 21149902 ~ 21164063 (-) False LOC120566633
XR_005640436.1 lncRNA downstream 56154 21160341 ~ 21164063 (-) True LOC120566633
TU143341 lncRNA downstream 115243 21101252 ~ 21104974 (-) False LOC120566885
XR_005640391.1 lncRNA downstream 148661 21070626 ~ 21071556 (-) False LOC120566356
TU143417 lncRNA upstream 22530 21252905 ~ 21256647 (-) True G106784
TU143431 lncRNA upstream 55939 21286314 ~ 21287781 (-) True G106793
TU143444 lncRNA upstream 81988 21312363 ~ 21314127 (-) True G106802
TU143459 lncRNA upstream 129941 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA upstream 159237 21389612 ~ 21401183 (-) False G106825
XM_039813192.1 mRNA downstream 786 21196765 ~ 21219431 (-) True LOC120566637
XM_039813193.1 mRNA downstream 787 21196765 ~ 21219430 (-) False LOC120566637
XM_039813194.1 mRNA downstream 787 21196765 ~ 21219430 (-) False LOC120566637
XM_039813198.1 mRNA downstream 788 21196765 ~ 21219429 (-) False LOC120566637
XM_039813195.1 mRNA downstream 788 21196765 ~ 21219429 (-) False LOC120566637
XM_039812670.1 mRNA upstream 2931 21233306 ~ 21238523 (-) True smtnl1
XM_039812663.1 mRNA upstream 71695 21302070 ~ 21308135 (-) True tmx2a
XM_039812660.1 mRNA upstream 83919 21314294 ~ 21348934 (-) False slc43a1a
XM_039812661.1 mRNA upstream 83919 21314294 ~ 21347428 (-) True slc43a1a
XM_039812659.1 mRNA upstream 83919 21314294 ~ 21340023 (-) False slc43a1a
TU143328 other downstream 89247 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 986293 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1239084 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1737659 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2001073 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 559878 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 889310 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1460785 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1760612 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1899334 23129709 ~ 23134785 (-) True G107284

Expression Profile