RNA id: XM_039814157.1


Basic Information

Item Value
RNA id XM_039814157.1
length 1767
RNA type mRNA
GC content 0.42
exon number 9
gene id yif1a
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23520126 ~ 23526960 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTCTGCCACGCAGGCACACTGAAGTCAACCAACCGCAGTGGATCATGGGTGGGATCCGCCGAGCCAGTCTGGTAGCCACGTAGCTAGCTGTGCAGctAACGTCAGTGAACGTCATAATGGACTTGCCACATCAGGGGTACCGAGCAACTAAACCAAGAGCTCGTGCAGCTCCCCCCACAGCAGATTCTGTCCTGTTTGATGACACAAGCTCTGCAGCACCAGCAATGAACAGTCAAGGATACTATACTCCTGGGTACAATATGGCAGGACCCTCAAATAACATGCAAGGAGGTGCTGGACCTGACCTGTTTGCTGACCCAATGGCTAACGCTGCAATGATGTATGGCTCCTCATTAGCCAACCAAGGAAAGGATATGGTGAACAAAGAGATCAGCAGATTCATGTCTGTGAACAAGCTGAAATACTTCTTTGCCGTCGACACTAGATATGTATTGAAGAAACTTATGATCCTCATGTTCCCTTACACACATCAGGATTGGGAAGTACGTTACCATAGGGACACTCCACTGACTCCAAGACAGGATGTGAATGCACCGGATCTTTACATACCGACAATGGCTTTCATTACCTACATTTTACTTGCTGGAATGGCCCTCGGCATTCAAAAACGGTTCAGTCCAGAGGTTCTTGGACTGTGTGCCAGCACCGCCCTTGTGTGGGTCATCATCGAGGTCTTGGTGATGTTGTTGAGTTTGTACCTGCTGACAGTCCACAGCGACCTCTCAACCTTTGATCTCATTGCCTACAGTGGCTACAAATATGTTGGGATGATCTTCACAGTGTTGTGTGGTTTACTGTTTGGCAGTGATGGGTATTACGTGGCTCTTGCCTGGTCCTCTTGTGCCCTTATGTTCTTCATTGTTCGATCTCTGAAAATGAAgatccttccctctctctcccctgactCCATGGTAACTGGATCAAGTGCCAAACCTCAATTCCGCCTTTATATAACTGTGGCTACTGCAGTGTTTCAGCCAATCATTATATATTGGTTAACCTCTCACTTGGTCAGGTGACCGTGAGGCATTAAATAACCTGAAGTCCAAGTGTGTTGGACCCAAACATTTGGTTATTGAGTGTTTATACACCTGCCTTTATACGCTTTTTTGTCAGTAAACTCAAAACATATGTAGACGGTGTTAAACTGCAGCGTGTGTTGAACTTGTCAGAGGGACATGTGACACAGAAAATGTCTCACTGgaagtagttttttcaccattAGTGCACAGTAACTCTGGCAAATGCTTATTTTGGCGATCTAACTTTGAACACAAGGGCTTGTTTAATCATAACTCAGATTCAGTTCAAGTTGCTCTACAATATTTACACCAGACAATACCACACAGACATaaaacgcacatacacacatgattCAAGTACCATTTTTTTCTGGTATGGTAATGTTGCTGCATTATCCCCCCTTTCTCTTGTGAGTCTTGGATTTTATTTATCTACATTCGAAAGAGCATGACaatgtttgatttttttgtagaaaaaaaataaatatatttagctTTGTGTATTCAATTTAAACAGTTTCTGAgacatttgtgtatttgttgtatctgtttttttttccttctgaaTAATACTGATTTGTGTCAGTTAATATGATTTAATTTCTAAACAGTCTATAACATTGACATAAGTGTTGCAAAGTTTACAGCTGTTCTCAAAGGGGGGAAAGTAACTAAAATGAATAAACTTAGAATGAATGTGCTTATGCACAATTTTGATGTA

Function

GO: NA

KEGG:

id description
K20362 YIF1; protein transport protein YIF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 256227 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 276186 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 295670 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 338409 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 346708 23092565 ~ 23173418 (-) False trpt1
TU144586 lncRNA upstream 265094 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 357637 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 357637 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 362945 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 672539 24199499 ~ 24259346 (-) True G107667
XM_039814156.1 mRNA downstream 116 23514615 ~ 23520010 (-) True si:ch211-145o7.3
XM_039813739.1 mRNA downstream 5950 23501341 ~ 23514176 (-) True atl3
XM_039813601.1 mRNA downstream 20078 23493111 ~ 23500048 (-) False cfl1
XM_039813602.1 mRNA downstream 20906 23493111 ~ 23499220 (-) True cfl1
XM_039813603.1 mRNA downstream 22109 23493111 ~ 23498017 (-) False cfl1
XM_039814041.1 mRNA upstream 9739 23536699 ~ 23539386 (-) True ccdc85b
XM_039813911.1 mRNA upstream 61170 23588130 ~ 23626365 (-) True mrpl11
XM_039812539.1 mRNA upstream 100131 23627091 ~ 23630156 (-) True LOC120566236
XM_039813067.1 mRNA upstream 104542 23631502 ~ 23639346 (-) True si:rp71-46j2.7
XM_039813645.1 mRNA upstream 116328 23643288 ~ 23645496 (-) True slc25a5
unassigned_transcript_474 other downstream 146118 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 333115 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 343126 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 354698 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 358667 23161388 ~ 23161459 (-) True trnaw-cca_11
XR_005640439.1 other upstream 359864 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 1046481 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1335152 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1752643 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 1752643 25279603 ~ 25288086 (-) True G107989

Expression Profile