RNA id: XM_039814164.1



Basic Information


Item Value
RNA id XM_039814164.1
length 923
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC120567262
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17480296 ~ 17482118 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCTGCTTCAGAGTTCAGTCAGCACACCTCTGCTGAACAGCCTGATCACACACAGCTAGGCTACCTACTGTACGTATTCAAGgaACCATGGCAAAGCGTGTTGCAGTTATTCTCTCAGGCTGTGGAGTCTATGACGGCACAGAGATCCACGAGGCCTCCGCTGTCCTCGTCCATCTGAGTCGGGCTGGAGCAAAAGTGCAGATGTTTGCTCCGAATGCAGATCAGATGCATGTTGTAAATCACTGTGACGGGAAACCTACTGAGGAGAAAAGAAACATCCTGCAGGAAAGTGCTCGCATTGCAAGGGGTGACGTGACTGATCTGGCCAATTTAGATGTTTCAGCATTTGACGCCCTCATTATCCCAGGGGGCTTTGGTGTGGCGAAGAACCTGAGTGACTGGGCAGTGAAGAATAAGGACTGCACCATCCAGCCACATTTAGAGAGAGCCAAGGCTTTCCACAAAGCCGGAAAGCCACTGGGCATGTGCTGCATCCCCATCCTCGCTGCCAAAATCCTGCCTGGCTGTGAGGTCACTGTGGGACAGGACAAAGAGTGTGAAAAGTGGCCGTATGCGCAGACAGCAGGCGCTGTGAAGGAGATGGGCTGCAAACACGTCAACACGGGTGTGGAGAAAGCACACGTTGATGTCAAAAATAAGCTGGTCACCACCAGTGCATTCATGTGCAATGCTCCCTTTCACAGTGTTTTTGATGGAATAGGAGTCATGGTTAAAGAGACACTGAAACTGGCTTAAGAAGTCTCTAATTACATTCTGGATGTTTGCATTTATTGACTTTAAAACCAATTGTGATTTCCCATACAAGCATACAATAGCAAGTTATGGCATGTAGGCTATGTTTCGGATGTTAATACATCAATTTGTTGTTTTGAGATTTTCAATAAAAGTTATTGCaaattacaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141792 lncRNA downstream 144344 17334404 ~ 17335952 (-) True G105597
TU141793 lncRNA downstream 155341 17324460 ~ 17324955 (-) True G105598
TU141778 lncRNA downstream 312538 17166988 ~ 17167758 (-) False frmpd3
TU141770 lncRNA downstream 326703 17152171 ~ 17153593 (-) True G105578
TU141757 lncRNA downstream 328728 17142146 ~ 17151568 (-) False tmsb1
TU141943 lncRNA upstream 185966 17668084 ~ 17730694 (-) False kif3a
TU141942 lncRNA upstream 247473 17729591 ~ 17730694 (-) False kif3a
TU142017 lncRNA upstream 273096 17755214 ~ 17755915 (-) True G105749
TU142028 lncRNA upstream 346504 17828622 ~ 17831148 (-) True G105759
TU142018 lncRNA upstream 374966 17857084 ~ 17859686 (-) False LOC120566288
XM_039814162.1 mRNA downstream 22045 17451649 ~ 17458251 (-) True LOC120567260
XM_039814163.1 mRNA downstream 23769 17451649 ~ 17456527 (-) False LOC120567260
XM_039814159.1 mRNA downstream 35236 17443222 ~ 17445060 (-) True LOC120567258
XM_039813045.1 mRNA downstream 122996 17351254 ~ 17357300 (-) True LOC120566521
XM_039813765.1 mRNA downstream 136337 17342141 ~ 17343959 (-) True LOC120566998
XM_039812741.1 mRNA upstream 12855 17494973 ~ 17498736 (-) True LOC120566359
XM_039814447.1 mRNA upstream 25005 17507123 ~ 17510542 (-) True glod5
XM_039813796.1 mRNA upstream 28831 17510949 ~ 17519476 (-) False rlim
XM_039813795.1 mRNA upstream 28831 17510949 ~ 17519475 (-) True rlim
XM_039813793.1 mRNA upstream 40023 17522141 ~ 17577811 (-) True nexmifb
TU141756 other downstream 328728 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 516822 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 805441 16592908 ~ 16674855 (-) False gria3b
TU141311 other downstream 1612441 15866067 ~ 15867855 (-) False hnrnph1
XR_005640446.1 other downstream 1861188 15604604 ~ 15619108 (-) False tspan17
XR_005640507.1 other upstream 40023 17522141 ~ 17577811 (-) False nexmifb
TU142030 other upstream 301442 17783560 ~ 17795223 (-) False LOC120567448
TU142092 other upstream 505140 17987258 ~ 17991871 (-) False sfxn1
TU142254 other upstream 821151 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 1205670 18687788 ~ 18691410 (-) True LOC120566257

Expression Profile