RNA id: XM_039814209.1


Basic Information

Item Value
RNA id XM_039814209.1
length 4127
RNA type mRNA
GC content 0.46
exon number 12
gene id klhl4
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21771722 ~ 21799995 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCCTTCCTTTCTGGAGAGGCAAACATTTTTGTGCTGAAAGAGTGACACGGGAGAAGAAAATGTTGGAGCAGTAAAGCACCGTTGGGATGTGTAAATTATTGGATTACATGCGGTTCCCCTCCATTGGCCATCCATTTTAGAAGATAATTCCAATGTTTGAATGCTGAGGACTAACAGTTAGAATCGGTTTTTCAGAGGAGGATGTCTGTGTCAGGGAAGAAGGAATTTGACGTAAAGCAGATCCTCAGGCTCCGCTGGCGCTGGTTCAGCCATTCATCCCAAGGTTCGGCTGGCAGTGGAGGCGGCGGTGGGGTGGGAGGCTACATCCAGCAGGATGGCCTGGACCACAGAGGGACGCCTGTCCAGGGCCGGCTGAAGAGTCACTCAAGGGAAAGAGGCGTTGGAGGACTACGGAAGACTAACAGCCCGGTCCGCAGCATCTTGGCACCGACGCCAGGGCCCACACCTGTCTATGTCAGAGCGGGTCAACAATCATGGCACCACCAGCAGAACACCATCCAGGGTCTCCAGGTCAACGAGGAATTTCCAAAGAGCAGCTCATCACCCGACACCACAAGGAAAGAGGACGCCATCACTGGCCAGGAAGATGTAAAGAAGAACAGCACAGAGGAACCTGCAGACATTGAGGCCAGAGAGAGGTTGGCTCTGAGCACCTTCTCCAGAATGAACACCAACTCCTCCGATGAGTTCTTCCAGGCCACAAATCATGCAGAACAAACTTTCCGTAAGATGGAGACCTACCTTCAGCACAAGCAGCTGTGTGATGTCCTCTTGATAGCAGGGGATCATAAGATACCTGCTCACAGACTGGTCCTGAGTGCTGTGTCGGACTACTTTGCTGCTATGTTCACCAGCGACGTGAGAGAGGCAAAGCAGGAGGAGATCAAGATGGAGGGAGTCGATCCGGAGGCCCTCAGATCCCTGGTTCATTTCGCATACACTGGCGTCCTTGAGCTGAAAGAGGAGACCATTGAGAGTTTATTGGCGGCAGCTTGCCTTCTCCAGCTTTCACAAGTCATCCAGGTTTGCTGTAACTTCCTGATGAAACAGCTTCATCCCTCCAATTGCCTGGGAATACGCTCCTTTGCAGATGCCCAGGGCTGCGTGGACCTGCTCAATGTGGCGCATAACTACACCATGGAACACTTCCTGGAGGTCATTCAAAACCAGGAGTTCCTGCTGCTCCCCACGGCTGAGATTGTTAAGCTGCTCTCCAGCGATGAGATCAACGTCCCCGATGAGGAGACCATCTTCCAGGCTTTGATGATGTGGGTGCGGTACGATGTCCAGCATCGACAACAGGACCTCGGGGTGCTTCTTGCCTTCATCCGCCTGCCTCTTCTTCCTCCACAGCTCCTTGCAGATCTTGAAAACAACAAGATGTTCTCTGATGACCTGGAATGCCAAAAGCTGCTGATGGAGGCCATGAAGTACCATCTCCTGCCTGAGAGACGTCCCATGTTTCAGAGCCCAAGAACCAAACCTAGAAAGTCCACTGTGGGCGCACTTTATGCTGTAGGAGGGATGGATGCTACCAAAGGCTCCACCACCATTGAGAAGTATGACCTGCGGACTAACACTTGGGTCCAGGTTGGAGTCATGAACGGACGCCGGCTCCAGTTTGGTGTCGCAGTTATAGACAACAAGCTGTATGTGGTCGGAGGGAGAGATGGACTCAAGACGTCCAATATGGTGGAGTGCTACAATCCGATCAATAAAGTGTGGTCCACCATGCCCCCCAtgtcaacacacagacatggacTTGGTATTGCTGTGCTGGAGGGCCCCATGTATGCTGTGGGAGGCCACGACGGCTGGAGCTACCTCAACACAGTGGAGCGCTGGGACCCGCAGGCCAGACAGTGGAACTACGTGGCCAGTATGTCGACTCCACGGAGCACCATGGGGGTCACAGCGCTTAATGGAAAATTGTTTGCAGTAGGTGGTCGAGACGGCAGCTCATGTCTGAGGTCGATGGAGTGCTTCGATCCGCACACCAACAAGTGGAGCATGTGTGCACCCATGGCCAAGAGGCGAGGAGGAGTGGGTGTGGCGACGTACAACAACTTCCTGTATGCTGTAGGCGGACACGATGCCCCCGCCTCCAACCACTGTTCTAGACTCTCCGATTGTGTTGAAAGGTATGACCCAAAGACGGATACGTGGACCACTGTGTCCTCCCTCAGCGTTCCGCGGGACGCTGTGGGCGTCTGCCTGCTGGGTGACAGGCTTTATGCTGTGGGTGGATACGACGGTCAGTCATATCTGAACACTGTCGAGTCCTACGATGCACAGAACAATGAGTGGACTGAGGAGGTCCCTCTCAACATTGGCAGGGCAGGCGCCTGCGTGGTGGTGGTGAAATTGCcttgagcatttttttttctcacgacAGCATGGGAAACAAatgagagagcagcagagaagagtggacaaacaaaacaacggaTCAAGGACACATCCTTTgagagtcatgttttttttcttcttctttaactCAGCTTTCCACATTTTTCGAGGGAAACAGACAGAACCTTGCCCATTGTTTCTGTCATTAGTGGACATGCCTACCCACTGGGGAGGACTTATTCAGAAACTGGACTGCATTGCACATTCTCCACATTCTCAACCGATCAAGAATTTTCACAGACTTGGATAAGCTGTAGCAAGTGCCAAGCCTTTGTTGTACTACTTTGTTTTATGAAACGTTCTGTGGATGTCcgtaaaattaatgtaaaagtTAAATTTTGAGTATATAGGTTAGTTTACATCTATACAGAGCCTTTTCTTATCAGTGccatcacatacagtatattttgggGATTATATTTCACTTTATAGCCACTCAAATGAAAGTTGTAATGATACATAAATGTTACCACGTACCTGGGTCTTTCCTTAGTGGGTGGTCTGAACAGATTCTTGCTCTTTAGCGACAAAGACCGCTGTGAACACTGAGCGTGAAGAATTTGTCCAGGCTACTTTGAAGAACAGGAATTAAATCAATTTTTTTGCTGAATATTatatttgaacattttcttttttattgagCCTGTAGCTACAGAACACCAAAGTAATTTGCTTGTCTTAGAAGTCTTGTTACACATTAAATACAAGTTTACAAAATTGTGAATTACAGAAAATATATCATATTGATATTTCACAGTGCTGTACAGATTTTTTTGTGAACTTTCTAAAACTACATTTGTGTTGATAGAATCATGCCTAAACCAGTGCACTCTGGTGACTAcagttattattattcttttgtctttatttctgGGCATGCTGGCTGAGCGAATGTTTTACTtgatttatacaatatattaagATCACTGTCTGTTCTGTATTTTTAAGGATATGAAGCCTTTGGGGTCATGTAGATGATCTTATTATTCACAACACAACCATTGGATTAACCCAGAAAGATTAGCAAACTGGCTGACCCAAACCAGCTATTTCGGCAGCACTCGGAAACCTGATTTCCACAGCATTTCATTAATGTGACTTTGATTGGAATTTTTAGGTTTGTAGTTGGTTGTTTTGCtcataaaagtaaaaatgttaCTAAATTTATCAAAATGAGAACCATTTGTAACTGTAATTATGCCATGTTTTTGGGGCCAAATTTAGTTAGTTTTTATCATAATTTTGTACAGCATGCAAACCGATAAATAAAATGACTTCAGTCTTCTCTGCACGTTCAAATCCATGTTTAGAGCTGAATGTGGCCCCTCAGTGGgcatatttagatttttcttgTTCTGCTTTAAGTAAACTAAACTGATTCTTTGACTAAACAGACTTGGACGCTACTTTGATGTTGGCAATAACCTCAATGTTCTTCTAATTGCAGCAACCACTTTTTAAATCCAGCAAGCATGTTTGTTGACAGCGCTCAGCAGACTGAAGACCAACTGCTattgcttgtctttgtttttttcattgtttaccCTCCAAATAGTTTCAAGGTCCCACCCCACCCCACTTTCCTCTTGCTTGTTTGGGTAGAtcttgatgtttttttcatacAAAATATTGGCTTAAGTGTCTAGATGTACAGGTTTAGTCCTTTTCAGAATACATATATCTTTTTCATTTTGA

Function

GO: NA

KEGG:

id description
K10442 KLHL1_4_5; kelch-like protein 1/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143757 lncRNA upstream 8081 21763367 ~ 21763641 (+) True G106975
TU143754 lncRNA upstream 10278 21760998 ~ 21761444 (+) True G106972
TU143509 lncRNA upstream 324626 21446882 ~ 21447096 (+) True G106851
TU143396 lncRNA upstream 420744 21298584 ~ 21350978 (+) False zdhhc5b
TU143393 lncRNA upstream 469029 21298584 ~ 21302693 (+) False zdhhc5b
TU143779 lncRNA downstream 43667 21843662 ~ 21843950 (+) True G106992
TU143814 lncRNA downstream 531017 22331012 ~ 22378340 (+) True G107025
TU143816 lncRNA downstream 531017 22331012 ~ 22378340 (+) False G107025
XR_005640407.1 lncRNA downstream 590358 22390353 ~ 22397051 (+) True LOC120566464
TU143843 lncRNA downstream 615007 22415002 ~ 22415335 (+) True G107050
XM_039813129.1 mRNA upstream 11501 21724428 ~ 21760221 (+) True ahnak
XM_039813122.1 mRNA upstream 11501 21724430 ~ 21760221 (+) False ahnak
XM_039813125.1 mRNA upstream 11501 21724430 ~ 21760221 (+) False ahnak
XM_039813126.1 mRNA upstream 11501 21724430 ~ 21760221 (+) False ahnak
XM_039813127.1 mRNA upstream 11501 21724430 ~ 21760221 (+) False ahnak
XM_039813358.1 mRNA downstream 635283 22435278 ~ 22603271 (+) True mid2
XM_039813357.1 mRNA downstream 688623 22488618 ~ 22603271 (+) False mid2
XM_039813359.1 mRNA downstream 688623 22488618 ~ 22603271 (+) False mid2
XM_039814406.1 mRNA downstream 850023 22650018 ~ 22660250 (+) False pmt
XM_039814405.1 mRNA downstream 850383 22650378 ~ 22660250 (+) True pmt
XR_005640584.1 other upstream 310272 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 1419555 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 1710384 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 2165949 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 3878192 17890967 ~ 17893530 (+) False gabra6a
TU143990 other downstream 1062195 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 1154977 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 1458276 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 1468796 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 1654572 23454567 ~ 23466184 (+) False ubl3b

Expression Profile