RNA id: XM_039814219.1


Basic Information

Item Value
RNA id XM_039814219.1
length 8724
RNA type mRNA
GC content 0.47
exon number 14
gene id arhgef9a
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 1799404 ~ 1862112 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATCACAAATCAGAGTGTCGGCGTCTGCAGGAGCTTACAGGGCAAGAGTTCACCGGTCTGTCGCTAACTCGGGGACTTTCTCTCAGTTTGGTGATAGCTGACGAAGTTTagaggcaaaaagaaaacacatgagAGTTCTACGGAGGAGTCGCTGTCCGCAAAATAACTTCATGGAGAGAAGTTTAGCCCGTGAAGTAGCCTGCACTGGATACGTTCAGCCCGGGGTGAAAGACGGTGATTTTATTGACTTTACGGACAGCAACGACGATGCCCATTTAAAACGGGGGAAGTTTTCTGGGGgtgtttgagagagagagagagagacagagacagagagagacagagagagagagagagagagagagaggccagaGACATGATGTCCATTGGAGCTGATAGCTGACACTGTAGAATGAGAGAGGATGGAACAGACTGACAACCCTGCCCTTGTGAGCACCAACCCTAATGGGTTTGTCAACCGAGTGTTTAATGTTTCTCTGGATGTGGAGAATGAGACCAGCAGTGTTTATATCCAGGAGGCTGGACCAGGGCTTGCAGAGGGGGAAGGAGAGACTCAGGCTGCCTCTTCTCAGACCCCTGTCAAAGACAGACAGGAGGTCATCCGGAGGCCCCGTGTCACAGGGGGTATCTGGAAGATCTTGAACCGAAAGAGAGCTGTCTCAGAACTGGAGCGCAGACCCCACTCCATGATCCTGCCCGGGGAGGCTTCCATCCCTAAACTCTCGTTTGCTGACAAAGTTCGCTCCTTCAAAAAGCTTAAGCCCCCCTCTGTGTTTAGAGGTAAGACAGGTAAATTGTCTACTGCCAAGTTTAGCAACTCCTTGGTGGATGACGAATCCTTCTGCCGGGACATTGGCACTCCTCAGCAGTCCAGCAGAAGCACACTCAGACAACGTGGCAAGAGGCATTCCTATGCTGGCTACACAGGAGACTTTGACTGCTCGTTCGAAGACATCGACCTCACAGCTCCTATAGACGGCCACCAGCCCACTGTAACGGGAGAGCCTGTGGCTCAGAATGGCTGTAAACCATCAGAAAGAGTTTGCTATACTAAAAGAAGCCACAACAACTCAACCAACTGTAACAAAACAGCTGCAGGCTGTGAAGAGCCTAGCATTAAAGGTAGCCCGAGCACCCACCAGGCTAGGGGAAGGAGGCACAAAGATGTGTGGAGTTACCTGAGGAGGATTTCCCTTTTGGGGAAGGCCAACCCTGTCTACTCAGAGAGGAGCTTTGACTCAGAGCTTCCCTCTTGGGACAAGACCATGGACTCAGACTATGGTTCTGTAGACTTTGAGAGTGTCAGAGACTTTCAACCACCGCCCCCAAAACACTCTGACCCAAAGGGGCACTTTGGTGGTCTGTTCAAGTTTTTCAACAGTGTAGCAGAAACGGCCAGGAAATGGCGGACAACATCGCACTCCTTCTCTCCTCCGGAGGGAGAGAGGACACCGACGAGCTCCCCACAGGTGACCAAGGCCACAGTGGACAACATTCACAGTGTGTCCCTGACACTTCACAGTGAAGAACACCAACAATCCCAGCCTATTCCATCATCACCAGTAACCGCTAAATCCTCACACTCCAGTAGCTTTGACAGCGAGGCTCCAGCACCTGTGACAGGTGGACGATCCCCTCAGGTGGTCCTGAAAGCCTTTAGGCCATGCCCAGGATCTCAAGCTGTCAATGGCCTTCAGAGTTATGAGGGCACAGACAAACAtgtagacagagagacaaaccaCAGGTCTACAGCCATAGCGGAGAATCACATCTATCAGTCAGGGCCAACCACGGGGACTAAAAAAGAAGCAGAGTTTGAAAGGGATCCATTAAACTGTCTGTGTCAAGAGGAAAAGGTAGAGGGACAGACAGGAAATGAGCAGGATTCCAGGGATGCTCCACCTGACTCCCACCACATACAGGAAGTGAATGTCCAATCACAACAAGGTGATAAAGAGAGCACAACCAATAGGGTACCAGCATCAGATTCCACAGAGGAAATATTTAAGCTGTGTGAGCAGATTGCCAGCCAGGCAGGCTGCGGTGGAAGGCAGCTGTGCCCAGCCATGCCCCACTCAAGCACAGAGAAGACCTCTGTACCTCACAAGCCCCTGCGTCGCCCTCGTCCTCGCCCGGCCTCAGCTGTATTGGACCTGCGGAGGCCCAACCTAGACCGAGATCTCTACGACCATTATAGTGAGGTTGGCTCACTATGCCGGCGGAGACGCAGGCCTGCGCCCACCATGCAACACTCTCCAGGGCAAAGACGGATGGCTGCTCGCTCCAGGCCTTGCTCTGTTATAGAGACCAGTGTTACTAGGGAGATGCAGTCCACGGAGCTGCACCACAGAGCCTTGTCTCGCCCTCCGGGTGTGTCACCGTTAGAGCCCCCGCTAAGGGCATCTCTCCAGCGGTGTCGCTCCCTGCCGCTCCCCCCCAGCACTCTCACTGCCTTGGCGCTGCTTCTGCCTCAGTCAGTCATGGGTCAGTCGTCATCGTCGGTGCGTCTGCGGTCTGGAGGCTCCAGTagctgcaggaggaggagactgTTAAGACCTGGTTCAGAACCGCTGCAGGTCAACATTTTGATAAGTGGAGGTTCAATCGTCAACGCTGAGGCGGTATGGGACCATGTGACCATGGCGGACCGGGAGTTGGCGTTTAAGGCCGGTGACGTCATCAAGGTGCTGGACGCCTCCAACAAGGACTGGTGGTGGGGCCAGATTGATGAGGAGGAAGGATGGTTTCCTGCCAGCTTTGTACGGCTGTGGGTGAACCAGGAGGATGGGGGAGCGGAGCCAGCCGAGGGGACCAGCGAGGTGCAGAACGGGCACCTGGACCCGACCAATGACTGCCTGTGTCTGGGCTCGCCCCTCCAGAACCGAGACCAGATGAGAGCCAACGTCATCAATGAGATCATGAGCACAGAGAGACACTACATCAAACACCTCAAGGACATCTGTGAGGGCTACCTGCGCCAGTGCAGGAAGCGTGTGGACATGTTCAACGATGACCAGCTGAAAGTCATCTTTGGGAACATCGAGGACATCTACCGCTTCCAAATGGGCTTTGTTAGAGACTTGGAGAAACAGTACAACACAGAGGACCCCCATCTCTCTGAAATCGGACCATGCTTTCTCGAACATCAAGATGGTTTTTGGATATATTCAGAATACTGTAACAACCACTTGGATGCCTGTATGGAGCTGAGCAAACTGATGAGGGATGGCAGGTACCAGCACTTCTTCGAGGCCTGTCGCCTCCTCCAGCAAATGATTGACATTGCCATAGACGGCTTCCTGCTCACCCCTGTCCAGAAAATCTGCAAATATCCACTCCAGTTGGCTGAGCTTCTTAAATACACTGCGCAGGAGCACAGTGATTATCGATACGTGGCAGCAGCACTGGCAGTAATGAGGAACGTCACTCAGCAGATCaatgagaggaagaggagactgGAGAACATCGACAAGATCGCCCAATGGCAAGCTTCTGTTCTGGACTGGGagGGGGACGATATCCTGGACAGGAGCTCGGAGCTCATCTACACTGGGGAGTTGTCATGGATCTATCAGCCGTATGGACGTAGCCAGCAGCGAGTCTTCTTCCTCTTTGATCACCAGCTGGTCCTCTGTAAGAAGGATCTGATACGCCGGGACATCCTGTACTATAAGGGCCGCATCGACATGGATCGCTACGACGTGCGGGACGCCATAGACGGCCGTGACGACGACTTCAACGTCAGCGTGAAGAACGCCTTCAAATTGTGCAACAAAGACAGCGAGGAGCTCCACATCTTTCTGGCCAAGAAGCCAGAGGAGAAGATCCGCTGGCTCAGGGCCTTCCACGAGGAGAGAAAGATGGTGCAGGAGGATGAGAAAATCGGTTTTGAGATCTCTGAGTACCAGAAGCGGCAGGCGGCCATGACAGTGAGAAAGGTGACCAAACAGAAAGGTGTAAACAGGTGCACGCCCCCCTCATACCCGCCCCCCCAGGACCCCCTCAGTGCGGGGCAGTATGAGGTAACGGAGGACATGGCACAAGGAGAGGTTTTTGAATTCAGTCAATCCAAAAGAGGCCAGGCTCCTTTCTGGCAGAATTTTAGTAGATTAGCTCCATTTAAGAAATAGAGATACACAGACTCTTCTGAAGGACCAGCTATTTTTGTTAGAAGCACCAAACACTGGATGATCATGTCCCATGATGAAGAAAAATacgaaaaacaaacaaacacacacacacacacacacacacacacacacacacacaagggactTTTGAAAATTAAGGACCATTGTTAATATAGAGGTTGATTGGAAGCAGCAAGAGGACTGAAGACTTGGATTTAAAACATTGAGGACAAATTACAACTTTACAATTCATATATGTCAGTAACGTTCTGAGTTATCATGCTTCTCCAGCCGAGTCAACAGTCATGAACTCTTTCCCTCGGATTCTGCATCTTCACGCCACCTGAATGTCCTGCAGTTCTTTAGATTGTTATATTAATTCATTTTGAATCCATCATCTGGAGAGAAACACATGGATAAACCAGAGCATTGCTAGTCGTATGATTGTGTCCAACAAAGCTGAGATCTTGCTGTGCTGCTATGTGAGATTGAATAATGACGGGCCTCAGCTACCGGCTGTGGCGTGTGAAGGGCCTGTGAAGCTCGAGCGTCAGCATGGTCTCCGAGTTCGATCCATTCTGACCCAGCCGGGCCACCTCTAGCGCTACTGATGTCTGCGTCTGGATCTCCTCCTCACTCCCAACGCTCCGTGTTGCTCTTGCTAGCTGTTCGCATTAGAGTAGCCCTCTCTTCTTCACCGAGTCTGACGCTCACAGTGTTTCCCTCACTCGCTGCATCCCTCTCGtgtcctctctatctctctaccCACCTGCTCAGCCTCGGTgagtcagtggctctcagaggaACAGCTTCATTCTCTTGGAAAGCTGCCATTGGCCATGATATGACGGGTCAGGGAACAAATCAATAGTCGGAACATCAATAGAATATTTACATCCTTTCACCAACCACTTTTGACAGGGTATTCATAACCGATCACACCGAGGGGCTGTGGTGTTTACGTTTGGCGAGAGAGAGCTTGCCGCTCAGATGAAACAGCTGGGAGCAGGAGATAGGCAGGCTACGGTCCACCTGCCTTGTGTCAGAGCCCCTCCCCCACTCTCCCCAGAGACCACCCCTGTAGCACTGTGCTGGCAGCTCACTGGGCGTTTGGAAAGAGAACAGCCTACCTCCAAGGAAATCCACTGAGAGTTAAAAGTGGAGTTGAAGAGGTCTAAAATAAGATCTTTTTTTCACGTCAGCTGTCAGAAGAAAGACTCCTTCAGTTAGCTTAAGTATTTTGTATTGCTcacattgtgtaaaaaaaagaaaaagaaaagaaaaaaaacacagcacataTTCAGTCTAAGGAGTACTTTCATTTGGGTAGGAGTGACGCAAACATTGCCACAGTGTGAGAAATTAGAACGAACCCTTAACCAGCAGAAGAAATGGTTGcaaaaaaaatggcagaaattCTAAACGGACAGGACAACCATAGCAGTCGGTCGTGAGTCTGAAAGAACGTACGCTGCAGAAGTGTGAGCCGATaccacagagaggcagagaggtgAATTTAATCTGTAGCATCCAGGTGTCCTCTGACAGATCCACACGTCTCTAAAGACCGTGTTCCTCTCCGTTGTTTTCCCAGATCTGATCCGTGTTCTGGCAGTTAGCTCGGCACTGTTAAGTGATTTACAGAGAGCTGGTGCCTGATCACATTGATTTGTTTAATCAACAATGTCTCTGAAGCTGCTGTGGGCGATCCTGCCACATGATACTACAACAGAGGTGTTAGGAAAGATAAGATCTACCGAGGAAAAAACTACAGATTTACACACATAATGAAGGTATATTCTTTTCTACAGTTGGAATGTAAGTGACATGAGTCCTACACGGTCCTTTTCTGTATGCTTTGTGACCTCAGATACAGAAGTACATTTTGTGTTGAATTATATCACCTGATGGacagtacatatacagtatgacaACTTGTGCAATGTGATAAATCATTATATATCTTCACTATTCACTACGACGTGATATGAAAGATTTATATATCGTTCTATGTCATTTGTTTGCCTTCTTATAGGCCTTATAACCTAttggggagagaaaaaaagacctTAGAATTGCTTTGTATGTTGTgtaatttatgttttgtttcagtAAAGAAAGTTGAGAAATGGGTGAGTTGGCTGCTGGTGTCTGTAGAGATGGCTCCCAGTGAGATTGTTTTGGAAGATAATTCCCTGGTCTGGCGCTGCAAAAAGATATGGTTCCCAGGCCATGATAACCTCAGGTCCCGTGCTacgcccccaccccccaccccctcctctctcGCCCCCATTCCTCTACTCTACGCCACCACCAACATACAGACATAAGCATGcaggcaaacacacatacaccccacacacacacacacacataatcatgCGCACTTGCTGGCCCGTTCTGCTGCGGAGAAGAGAGATGCTATCTAACAGTGCCTTCCAGCATTCCACTAGTGATTATCTATTCAGTTTCACAGGCAGATTTGAATTAGTCATGTATTTTCCCTTCAGTGTGGGacttgcatctctctctctctctctttctttttctctctctctctctctctctgtcgttCTCTCAAACACACTGGGAATTCCTCGTTCTCCAGTGCATGAGATCCACTTGGACAGAAACTTAGAGGCCAGGCCTTTTCCATATGAGTAGATACTGTGCTGTCTGACTGAAAAACAccttattatattatatcacaCGTACATAGCCGTAATTTTATTGCACAAAAATAAGTTAATTCTAATTTCAGACGTTTAGAAACTGCATAGAATTCCTTTATTGTTATCTATTTAACATGCTGAAAGGTGGTCTCATTTGAATTTATAGTAGGAAACAGATTTCCATTAGTCAAGTTATAGGTTTCACTTTTCAAAATATGTTATTAACAGTGAGTTATGAATCAAAAGAAGAATCATCTATTTTATCTTTATCAGCtacactgtaaataatgtaaaaagaaCAGATCATATATTTGGATATTGGTATTTTGCGTTGGAGACGAATGTTGTTCCAGTTCTAGCGTGCGGTAGACCTCAGTACCAGGTAAATGCATGCTCGTGGCATCCAATATTTTGCATGAGACTTTAGACAACTCTTAACAGATTGTTTAGTTTCATTTAACTTCCAATGGGATTTTTTCACACCACGGAACCATTCATTTGTGAACCCATGCCATCTCACTGCCGGGAGTTCTTTTCTCTGTCCACCTGTCTCCTGCTCACGACATATTACAGCTTGTagcttctgtttttatttattaagtagAGGGGAACATCTTTCATCATGCTGAATCAAAGACTGAACTGTTGATAGGTGAAATGAAAGGCACTAATGCTCTCTTTGCCCAGATATATTGGGTAGTATAAACTATAAACTTGCTCTAAATCTTTataactttcttttcttttgactCCAACCTGCACTGTCACGATCcaaactgctgttttttttttttttggaattccATTAACCGCTGAGGCAAAACGGGTATCATTTTCTATGACAACAGTGAACCAAATAGGAGTTAGCACTGATAATGGGTGTTTGTGTATAAATTTGTAGTCAAGCAGAAGAGCTGAATAAATGCGAAACCTCTCGGGATGagctaaaaataaacataatcctgaagatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcattgcaATTCATTTAGTGCTCTTGTTTCTGATTAAGACATGATTCTTTGAAGTACAATGACATCACAGTACAAATTAATTCCACACTTGTATTTATTGAATGCAGTATTAAATAGTACCAGTTTGGCCACATTGTTAAaaagtatgtatatattgtttttatttttctgataTAATTATAATTCTGCCCTTGTACTGAGAGCTGAGAGGACAGCCTTCTGTGTggaagattgtttttttttcttctatttcatAAAACCAAGACAGCCAATTTAGCAGACTGTCAATTGGATGCATCAGAATTATGTAATTCCTTTGAGTCCAGGGCGTACGTGAGTCGCTAACCGCGTTCACTCACATTTAGCATAGCGACTATCTTCAGTAGGAACTCCTTGCAGTTGGTTATGCAGTTCTGTGTTGTTTCAAAATAGTCCGGGTACAACAGAGTCTTCACTGAGCCATATATTGATGTGGTGTCCTATGACAACAAGGGTAACAGAAGACTGACATCCCACTTTTGGAATCTATCCATTGTATTATACCATCTAGTTTGAGGTCTGGATTTTTGCCTATCACAGAAAATTGAATTCACAGTATCCATATCCTATGTCACCATATGCAAacatttgtcattttctttcttgctgGCCTTTGAGTTTGATTATTTGTTGTAGAaatgaaaaacctgaaaaataaTGCCTATTCAATCCAGAAACTGTGAATGGGAGAGTGGAGATGTCAACTGTATGTACATTATATGTTTTGATGTAATCAGAAGCACTGGGAATATGTTGTACTTCGctgtaaaaataaatccatATCTGATATAGCTGTActtttgttgaaaataaaaccTCTACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138151 lncRNA downstream 137205 1634594 ~ 1662199 (-) True G102638
TU138132 lncRNA downstream 197869 1593835 ~ 1601535 (-) True G102621
TU138116 lncRNA downstream 242968 1555856 ~ 1556436 (-) True G102609
TU138114 lncRNA downstream 245862 1553327 ~ 1553542 (-) True G102607
TU138113 lncRNA downstream 246415 1552513 ~ 1552989 (-) True G102606
XR_005640531.1 lncRNA upstream 74462 1936573 ~ 1937187 (-) True LOC120567184
TU138273 lncRNA upstream 357465 2219576 ~ 2221446 (-) True G102741
TU138281 lncRNA upstream 436677 2298788 ~ 2299221 (-) True G102748
TU138282 lncRNA upstream 437562 2299673 ~ 2300414 (-) True G102749
TU138287 lncRNA upstream 446355 2308466 ~ 2310822 (-) True G102754
XM_039814226.1 mRNA downstream 4282 1791628 ~ 1795122 (-) True LOC120567293
XM_039813366.1 mRNA downstream 15753 1768538 ~ 1783651 (-) True LOC120566745
XM_039813365.1 mRNA downstream 15913 1768538 ~ 1783491 (-) False LOC120566745
XM_039813363.1 mRNA downstream 15913 1768538 ~ 1783491 (-) False LOC120566745
XM_039813362.1 mRNA downstream 31996 1750801 ~ 1767408 (-) False LOC120566744
XM_039813274.1 mRNA upstream 314756 2176867 ~ 2197918 (-) False sh2d1aa
XM_039814365.1 mRNA upstream 338252 2200363 ~ 2204158 (-) True LOC120567407
XM_039813301.1 mRNA upstream 348149 2210260 ~ 2219328 (-) False apool
XM_039813302.1 mRNA upstream 348149 2210260 ~ 2219217 (-) False apool
XM_039813303.1 mRNA upstream 348149 2210260 ~ 2219125 (-) True apool
TU137926 other downstream 957858 838961 ~ 841546 (-) False insb
TU137703 other downstream 1567960 220592 ~ 231444 (-) True G102276
XR_005640447.1 other upstream 318932 2181043 ~ 2197917 (-) True sh2d1aa
XR_005640435.1 other upstream 1030308 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other upstream 1034060 2896171 ~ 2896313 (-) True LOC120567496
TU138946 other upstream 2040880 3902991 ~ 3925309 (-) True G103268
TU138957 other upstream 2066943 3929054 ~ 3933202 (-) False smim19

Expression Profile