RNA id: XM_039814233.1


Basic Information

Item Value
RNA id XM_039814233.1
length 2988
RNA type mRNA
GC content 0.42
exon number 2
gene id gjb1b
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 16513561 ~ 16518060 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAACAGctcatgtattttttatttttttgggatgAATCTGCAAACCTGTTAGTGACTCAAAGACGGTGCCTCAGGTCTAAAAGCTTCCTTCACTTCCCTGCCCTGCCAAGCACAATAAATAATGTGGCAGGCTGAGGCCTTTTGTGTCCACACAGATTCCTTCTTTTGCCCGGGGTAGGCGGAAATCGAGGCGTTTGATCTGAATTCTAAAGAGTCTTGTTGCAGCCCAATAAAGGCTGCCATTGTATGTAAATAGTTTATATAAGAGCATATGACTGCTACGGTGCAGGGCACTGGCTAGCGGCGGAGGAATGATTAGCATTTTCCAAACGCATGGTGTTCTCAGCCAGCCTTCTggctttctttaaaaaaaaacactattttaaTTAATATCTTCTTTGTACACATTTTTGTGTACCAACACAGCTGAAGACCTGGAGTCGAAAATGAACTGGGGGACCTTTTATGCCGTGGTCAGCGGCGTAAACAGGCACTCCACCGGCATCGGACGCGTTTGGCTCTCCGTCATCTTCATCTTCCGTATCCTGGTCCTGGTGGTCGCCGCTGAGAGCGTTTGGGGAGACGAGAAGTCCGGCTTCACCTGCAACACCCAGCAGCCCGGCTGCGACAGCGTCTGTTACGACCAGTTCTTCCCCATCTCGCACATCCGCCTGTGGGCGCTCCAGCTCATCCTGGTCTCCACCCCCGCCCTGCTGGTGGCCATGCATGTGGCCCACCGACGCCACGTCGACAAGAAGATCCTGAAGAGGACGGGCCGCGCCAGCCCCAAGGAGCTGGAGCACATCAAGAACCAGAAGTTTCAGATCACCGGAGCTCTTTGGTGGACATACATGATCAGTATCCTCTTCAGAATCCTCCTGGAGGTGGCTTTTCTCTACATCTTCTACTTGCTTTATCCTGGCTTTAAGATGGTGCGTCTGGTAAAGTGTGACTCGTACCCATGCCCCAACACGGTGGATTGTTTTGTCTCCAGGCCGACCGAAAAGACCATATTCACCGTGTTCATGCTGGCAGTGTCTggggtgtgtgtgctgctgaaCCTGGCTGAGGTGGTATACCTCATAGGCAGGGCCTGCAAACGGTGCTTACGAGGCTCTGACGAAGAGTCCAAAGTCGCTTGGATAAGTCAACGATTGCCTACTTATAGACAAAATGAAATCAATCAACTGATAGCAGACCACTCTCTCAAGTCGAAGTTAAATGTGACCAAAAAGAGCCCAACTGAGAAGGGTGAAATGTGTTCTGCTTTCTGAGACTCTGCCTCTCCTGTTCCCGTCGAACTAATCAACAGTAATCGCACACGTCCCTGGAGTATTTTGCTCTGCATTAATGTCACATATTCTGTATATTTCATCATTGTCAGCAGACACATTTGgactatttatttatgcatCACTCAGTCTACCGCATATTGAgtcatctgtttttttctttgttattgGTTTTACTGAGTAGTAGCTGTGTTGCTGTTGGAACTCATAGTAGCCAGTAGTGAAGGTTAAAGGACCATAGCATATCGGCGTTTTAGTCCACTTACTAAAAGTCTGgcatttttgttgatttttagtGGTTTCATTTAAATAGCTGAGGCGCAGAAACCATGCTTGTGTCATGGTTGCGTGATAATACAGTTCTCAATATGGATTTGTTTGAAAATCCTGCAGATGTTGGCACACTGGTTAGAAACCACCAACTGCTGCTACGCAGTTGTATTTACAAGCTATGATGCATGGAAAGTATGCCCATTAAGCAAACCTtgatttgaaaaatgaatatttattatttgGCATTATAAAGGTTTCTTTTAGGGAAACAACTGGATTCTTGGATGTCAGTTTATTTCCAGCACACAGATCCACTGCGCTGCAGATTTGTCACATTTCAGCTGCTTTGTCACGCAACAAGAGTGTAGCTTTGACACATATAAAGGAAACGGGCAGCTGTCCGGAAGGCacgaaaacataaaaaaacttacaaaattaatttaatttggcCAAAATGTGCAGAAACACTGTTATGGTTCTCAAAGTTGCAAAGATTACAGTAGAGATTAAAATGCTGGATAAAAAGGGGAACTTTTTATTTACATGAAACATGTTGATATGTGCCATATTTATTCCAGTCGGAATCAAAGCTACATAATAGAGGAAAAGGGCATTTATGTATTAAAGTAAATGAGTAAGAGTACAGTAAATGCCATTAAATGTCAGTAACAGCCCTTTAAGACAAGTGGTGTGCTTGGATTATATTGGACAGTTTTAGTTATTTGACTTTGATGAACTTTGTACACACAGCAGTAACTATTATGTATCTTAGCACACTGCTATTCCGATATTTTAACATTTGGTGCTAGAAAACCAAAGAAAGTTTTTAAAATAGTCCAGGTACGGACAACTGTCATTTCATGTTAACGTTTTAcaagtgatttaaaaataaaattcattTGAAAACAATTTTCCACAAACGTATTTTTACAACTGACCTATTAATTATATATCTTGACAGAGTAGTCAGAATGGTGCACAGGGCAAAAGTATATTTCAATAAACCTTGTAAaagtactgtacatatatgTCTTTGGATTCAGTTGTAAACACTGCCTACTTACTTCATTGTGCCTTCTGTTTGAGTTGATCTTTGTTTGTGAAAAATGCTTGAGGTTGACCTACTTTATAACAGAGACAGTTGCACTTGCTTTCCTTAATATTGTCCTGTATGAAATTACTCGGTATCTCTCTGGTCCTGAAAATGTAATGTCCCATACGCTGGTATCCGTTTATACAACTGTTCTTTTATAAAGTTATACACATTGTAGGGCGTACAAAAACCCTGTTGTCAACATTTATTCTGTACATGCAGTATATGAATTTACACACGGGTAAACAATCCGGTTAATAAGTAATATGGGTTGAAACAATATGTGTTCTTTATGTAATATAAAGAAATAAACTACCTGAtaattttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141531 lncRNA downstream 7283 16466448 ~ 16506278 (-) True G105417
TU141525 lncRNA downstream 7283 16467051 ~ 16506278 (-) False G105417
XR_005640512.1 lncRNA downstream 16239 16496457 ~ 16497322 (-) True LOC120567052
TU141424 lncRNA downstream 174543 16334273 ~ 16339018 (-) True G105337
TU141418 lncRNA downstream 249142 16264201 ~ 16264419 (-) True G105332
TU141519 lncRNA upstream 6879 16524356 ~ 16596298 (-) False gria3b
TU141551 lncRNA upstream 170002 16687479 ~ 16687729 (-) True G105433
TU141553 lncRNA upstream 170579 16688056 ~ 16688590 (-) True G105435
TU141554 lncRNA upstream 171606 16689083 ~ 16689305 (-) True G105436
TU141562 lncRNA upstream 237859 16755336 ~ 16755558 (-) True G105443
XM_039813845.1 mRNA downstream 450 16509358 ~ 16513111 (-) True LOC120567053
XM_039813550.1 mRNA downstream 99230 16395235 ~ 16414331 (-) True ergic1
XM_039814171.1 mRNA downstream 184050 16324573 ~ 16329511 (-) True npy7r
XM_039814169.1 mRNA downstream 190184 16316611 ~ 16323377 (-) True prelid1a
XM_039814165.1 mRNA downstream 204146 16298820 ~ 16309415 (-) True fam193b
XM_039814231.1 mRNA upstream 677 16518154 ~ 16526951 (-) False LOC120567296
XM_039814230.1 mRNA upstream 677 16518154 ~ 16526949 (-) True LOC120567296
XM_039813983.1 mRNA upstream 12793 16530270 ~ 16533180 (-) False LOC120567142
XM_039813982.1 mRNA upstream 12793 16530270 ~ 16533180 (-) True LOC120567142
XM_039813985.1 mRNA upstream 15805 16533282 ~ 16537447 (-) False LOC120567144
TU141311 other downstream 645706 15866067 ~ 15867855 (-) False hnrnph1
XR_005640446.1 other downstream 894453 15604604 ~ 15619108 (-) False tspan17
TU141106 other downstream 1378825 15133530 ~ 15134736 (-) True G105086
XR_005640448.1 other downstream 1406527 15089404 ~ 15107034 (-) False rnf44
TU140912 other downstream 1774081 14735291 ~ 14739480 (-) False LOC120567441
XR_005640433.1 other upstream 75431 16592908 ~ 16674855 (-) False gria3b
TU141625 other upstream 440185 16957662 ~ 16963474 (-) False rab9b
TU141756 other upstream 624669 17142146 ~ 17151568 (-) False tmsb1
XR_005640507.1 other upstream 1004664 17522141 ~ 17577811 (-) False nexmifb
TU142030 other upstream 1266083 17783560 ~ 17795223 (-) False LOC120567448

Expression Profile