RNA id: XM_039814240.1


Basic Information

Item Value
RNA id XM_039814240.1
length 2030
RNA type mRNA
GC content 0.45
exon number 2
gene id gdf9
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17860860 ~ 17864154 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGATGCAAGATACAGCATTGTTTAATTCAACTTAACCATGCTATCATTTAAAAATAGCCTCTTGCTGTTTTTGCTGACTGGGATATCGTGACTGAACAAGTCATAACTGGTCCCTTACCTGAGAAAGTAGCCTGGCCTATGAGTGATAGAGTTGATTGCCAACACCTGTGCATGTTGATGAGCGGCAGCACTTGCGTGGTCCTGTTTACCTCGAGCTCTCAGTGGAGATTCTCTCTAAGCTTAGTCTGGTTTCGTTGTTTATAATGGAAGAACAAATGCTGATGGCAGCTGCCCTTCGTTATATTCGCACAGTTTTCTTACTGCTGCTTGTCACCTGCAGCTCCCCGCTGGTTAGATCATCTCTGGCTGCCTCCAATGCGCTGAACAACCTGGATGACTTCACCTACCCTTATGGCAGTATCTTCTCCCCACTGCTCAAAGCCCTGTCGGAGCACGCAGGGTCGAGGTGGAACCCAGGACTGAAGAGAAAGATGAAACCCGACCACAGGTACATTAAATATCTGACGGAGGTTTACAAGAAGTCCTCCAGAGTGCAGAGGAGTTTGGACGGGAATAGGATCTACAACACAGTCCGACTGATAAAGCCACAAGATGAATGTCTTGCACAAAGTAATAAAGAGAGTTTTATGCAGGATCTTTCCTACAGCCTTGATCAAGTTAGAAGAAAAGAACAGCTTCTGAAGTTGGCCCTGCTGTATAATTTTGACCATGCAGCACCTATCAACTCTGTATGTTACCTGAGTCTCAAGGAACAGGAGCCTTCAAACCAGTGTCCGCTGTGTCCTGGGGTCCACAACGCTGTGAACTTCACAGTCAGGACAGACGAGCGGAGCAGGGGGAACTGGGTGGAGGTTGATGTCACCTCATTTCTCCAGCCTCTTTTAAAgtttcagaagaagaagaacataaACCTGCTAATCAATGTCACCTGCCCAGAGGAACAAAGAGCCAGTGGTGATGAGCGCAAAGGCCCACAGAAGTTCACCCTGAGGTCCCCTCCTCTGCTTCTTTATCTTGATGACACCAGCAAAATCAGCCACCAGAGGTTTCTGGTCAAAGCAGATCAAAGACCAGCCACTGAGGCAAACACATTTCACAAACCGATAGTTTTCAAACCAGAGCAGAGGACTGGGCGAATGAGAAGATGGAAAAGGGAATCTTCAAAGAGCAAACAAGGCGATAAAGGTCTTGATTTCCACCTGCCTGAGCTTCTTCCAAGCTCTGAATTCCAGACAAGCGACTGTGCCTTGTATGATTTCAGGGTGCGATTTAGCCAACTTAAACTGGATCACTGGATTGTTTTTCCACCAAAGTACAACCCCAGGTACTGCAGAGGCATCTGCCCGAGGACCATGGGCTTCATCTACGGCTCACCTGTGCACACCATGGTGCAAAACATCATCTATGAGAAGCTTGACTCCTCTGTGCCCAGGCCCTCGTGTATTCCCTCCCATTACAACCCCCTGAGTGTCATGATGTTTGAAGAGGATGGCTCCTATGTCTACAAGGAGTTTGAAGACATGGTTGCCACCAGGTGTACATGTCGCTAAGCCAGCTACCAACatgtctgttctttttttttcttctagctGAATAGAACATCACCACAAACCTCATCACAGGTGGACTCTATCCAAGTACTGGATATTCTGACCAGGTTCAGTGATTTCATGAATTTGTAAAATCGTTGTGCATGAAGTTTGATCTGGAGCAGGTGTGTTTACTTAAACAAAAAGTATTTTATCcctgtgaaaaatgtggaaggGTGACATTTATATCCTTTTTATGTTAAGGCGTGACAAGAAAGGGTGCCAATGCATCCTGTTCTAGAAACTTACTGTTTGCAACATAGTATTGATCTGACACACTTAAAGAAGAAAATTTGTGTTGTATgacttttgtatattttttttttttaagttaaattaaGAATGTGACTTTATGCATGTCatgtctatttaaaaaaaaaactaagaatgaattcactgtgtgtctgtgctcagCTTA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22673 GDF9; growth differentiation factor 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142018 lncRNA downstream 1174 17857084 ~ 17859686 (-) False LOC120566288
TU142028 lncRNA downstream 29712 17828622 ~ 17831148 (-) True G105759
TU142017 lncRNA downstream 104945 17755214 ~ 17755915 (-) True G105749
TU141943 lncRNA downstream 130166 17668084 ~ 17730694 (-) False kif3a
TU141942 lncRNA downstream 130166 17729591 ~ 17730694 (-) False kif3a
TU142039 lncRNA upstream 10682 17874836 ~ 17876295 (-) True G105768
TU142043 lncRNA upstream 12878 17877032 ~ 17879121 (-) False G105769
TU142040 lncRNA upstream 15362 17879516 ~ 17881994 (-) True G105769
TU142063 lncRNA upstream 64678 17928832 ~ 17933470 (-) True G105784
TU142089 lncRNA upstream 114158 17978312 ~ 17980298 (-) True G105806
XM_039812632.1 mRNA downstream 1105 17857117 ~ 17859755 (-) True LOC120566288
XM_039813923.1 mRNA downstream 4484 17847776 ~ 17856376 (-) True hspa4b
XM_039813411.1 mRNA downstream 14306 17843883 ~ 17846554 (-) True gnpda1
XM_039813412.1 mRNA downstream 17489 17834717 ~ 17843371 (-) True LOC120566774
XM_039814419.1 mRNA downstream 65469 17783560 ~ 17795391 (-) True LOC120567448
XM_039813049.1 mRNA upstream 6048 17870202 ~ 17871569 (-) True sowahab
XM_039813050.1 mRNA upstream 95725 17959879 ~ 17968780 (-) True fbxl3l
XM_039814377.1 mRNA upstream 123042 17987196 ~ 17995350 (-) True sfxn1
XM_039814379.1 mRNA upstream 131821 17995975 ~ 18000829 (-) False LOC120567416
XM_039814380.1 mRNA upstream 131821 17995975 ~ 18000677 (-) False LOC120567416
TU142030 other downstream 65637 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 283049 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 709292 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 897386 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 1186005 16592908 ~ 16674855 (-) False gria3b
TU142092 other upstream 123104 17987258 ~ 17991871 (-) False sfxn1
TU142254 other upstream 439115 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 823634 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 1351835 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 1615864 19480018 ~ 19482558 (-) False tlr1

Expression Profile