RNA id: XM_039814256.1


Basic Information

Item Value
RNA id XM_039814256.1
length 2460
RNA type mRNA
GC content 0.49
exon number 11
gene id si:ch211-107m4.1
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23357417 ~ 23363363 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGGCACCATATTGAACCGATGTTTTGATCCGAACTGCTACCTTTCTCCTTTAGTTTACTATAACCTCTTTGGTTTACTTTGAGTCCGATATTTTGCCACAACTCGATTAAAAAATCACCTGAATTTGCACTCACACGGTAGCAATGAAGCTAACGGACATCAAAAAGCTAAAAGTGGCCGAACTGCGGTCCAGACTTAAAGAACTCGGGTTGGACAACAAGGGACTGAAAGCTGAGCTGTTAGGCAGGCTGTGGTCCGCGTTAGAGGCAAAACAAAGTGCGAAGGACGGTGATGAAGAGATACAACTACAAAATGACCGCTCACACACACCTTCAGCACCGGTGGAGACAGTGGACATAGTGGACATCTGCACTCAGTCCTCATCACCCCCGACAAGAGCTGTAATTTCTGAGCGATATAACGTGAAACCGGACTGCATCCGAGAGTACACAGACACCGCCACGCAGACAGAGACCGATACCGGTCTGCCATCTCTACAACACGGCTCCGAGTGTATTTCCGAGTATGTGCCAGTGCACCAAGCGGAGGAGAGAGAAGTTGAAATGCAGCAGGGAGGTACAGAGGATCCTGGAGAGGACAGGAGAACTCTTTCATCAGAAGAGATGGGCAGAGGAAGAGCTTTCTACGAGTTCAAAGAGGAGATAAGATACAAAAGAGCCAAATCACCACATTCTCCAGTGGAAACGGAGGAGacggaggaggaagatgaagatAAAGTCAGACTAGATCCATATGACAGACACCTCCACTTTGAGGTGGGTCCTGATTGTGCATGTGGCCAGCCGCGGTTCTGGGCTCGATTCCCCTCGCTGTGGTCAGGCTGCAGGCTCACCCACGGGGTGCTGCAGGGCAGAGTGAGCTTTGAGGTGAGGCTGGAGAGGAAGTTGCTGACTACACAGCTGGAGGAACAAGAACACATGGATCCTTATGGCCTGAGAGTCGGCTGGTCTGTGTCCAACACCTCTCTACTGCTGGGTGAAGATGAATTCTCTTTTGCTTATGATGGGCGTGGTAAAAAAGTGTCAGGTGGGAAGGTGGAAGAGTTTGGAGAACCCTTCTCAGAGGGAGATATCATTGGCTGTTATGCTTCTTTCTCCACAGACGGTGCTGTTGAGCTCTCTTTCCATAAGAACGGTCGTTTCATGGGGGACGCCTTTTCCCTGGACGCTTCTATGCTGCTGGGTCGTCCTCTTTTCCCTCACGTCCTCTGTAAGAGCTGTTCAGTCAGATTCCTCCTAGACCCCACAGCTTCTCCCTGGTACCCGGGTCCTCCAGGGTTCATACCGCTGGCAGCTCTTTCTGCTGGGCAGAGGGTGTGCACCACATTGCCTCCTACCTTCAGAGAAAACTGTGAGATGTTGTTGATGGTTGGTCTTCCTGGTTCTGGGAAAAGCCACTGGGCAAGGACTCAAATGAAGCAGCATCCAGAGAAACGGTACAAGCTGCTGGGCACCGAGGAGCTGCTTGCATGTATGATTagtGGTGGACGGAGGGACAGCAGGCTGCAGCAGGCCTCTCAGTGTCTAACTGATTTGATTAAGATGGCTGCTCAGACAGCTGGCAACTATATTCTCGATCAGAGCAACATCCTCTTCTCTGCCCGGCGGTACAAGCTGCAGCTGTTCACAGGCTTCAGGCGGCGGGTGGTGGTGGTCTTTCCCTCAGCAGACGAGTGGAAAAGACGACTGTCTCTGCACCAGACGAGCAACGGGGAGCAGATCCCTGAGACCGCCCTGCTCAAACTCCAAGTGAGCTGCAGTCTTCCAGAGCAGCAGGGCGACctgctggaggagctgcagtaTGTCGAGCTGCCTCAGGAACAGGCACAGGAACTCCTGCAGGAGTATAAAGTTGAGGCCCGCAGACTGCTGCCCCCCATCGCCAAACACGAGAAGAAGAAACCCCGACTTCACAAGAAAAGACCCCACCCTCACGGCCCTCTACCCTCGCATAGGATCCAGTGGACTGGACTTCATGAATGGAATGACACAGGACTCAACATGCAGCCATGGAGGCAGCAGCCAAGATATtgGAGTGAGCCATATCTGGACCAGGGCTACTACTATAGAGATGTTGGTTACAGCGGATATGAAGGGTACTGTTGAAGAAACCTGGAGCAAGAGGAAACGGATGAGTTTGAGATCTGTGTTTACATGGACGATCATTCTACTGATGTTAtttaatagtttaaaaaaaaacaactaactaCATCAGCAAGTTATATTATACAGAGAACTAACGACTACGGTGTATGTTGCACTCTCTGCTTTGACCAATCAAAGACCAGGTCACTTTTTAGTatttttattcaaatatttgaaaaatgtcatgtacaaattatgaaaacatttactgtattttgCACAATTTTACCACCAGTATTGGTCAGAGAGTGCTTAAAGTCAAATAGTAATAAATCCCTGAATTTGAATGAAAA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03410 Base excision repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA downstream 93518 23242037 ~ 23263899 (-) False G107324
TU144201 lncRNA downstream 113477 23242037 ~ 23243940 (-) True G107324
TU144152 lncRNA downstream 132961 23170148 ~ 23224456 (-) True G107282
TU144160 lncRNA downstream 175700 23179692 ~ 23181717 (-) True G107290
TU144149 lncRNA downstream 183999 23092565 ~ 23173418 (-) False trpt1
TU144586 lncRNA upstream 428691 23792054 ~ 23792502 (-) True G107610
TU144596 lncRNA upstream 521234 23884597 ~ 23988901 (-) False rab41
TU144597 lncRNA upstream 521234 23884597 ~ 23971180 (-) False rab41
TU144595 lncRNA upstream 526542 23889905 ~ 23892263 (-) False rab41
TU144657 lncRNA upstream 836136 24199499 ~ 24259346 (-) True G107667
XM_039813522.1 mRNA downstream 5848 23346187 ~ 23351569 (-) True dnajc4
XM_039813519.1 mRNA downstream 13219 23328250 ~ 23344198 (-) True vegfba
XM_039813520.1 mRNA downstream 14974 23328250 ~ 23342443 (-) False vegfba
XM_039813521.1 mRNA downstream 16036 23328250 ~ 23341381 (-) False vegfba
XM_039813669.1 mRNA downstream 34460 23315838 ~ 23322957 (-) True stx5a
XM_039814301.1 mRNA upstream 719 23364082 ~ 23368791 (-) True zgc:153018
XM_039812629.1 mRNA upstream 80189 23443552 ~ 23453056 (-) True foxo4
XM_039813601.1 mRNA upstream 129748 23493111 ~ 23500048 (-) False cfl1
XM_039813602.1 mRNA upstream 129748 23493111 ~ 23499220 (-) True cfl1
XM_039813603.1 mRNA upstream 129748 23493111 ~ 23498017 (-) False cfl1
TU144162 other downstream 170406 23184272 ~ 23187011 (-) False rnaseh2c
TU144153 other downstream 180417 23175691 ~ 23177000 (-) False trpt1
unassigned_transcript_473 other downstream 191989 23165357 ~ 23165428 (-) True trnaw-cca_12
unassigned_transcript_472 other downstream 195958 23161388 ~ 23161459 (-) True trnaw-cca_11
unassigned_transcript_471 other downstream 196487 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_474 other upstream 10573 23373936 ~ 23374008 (-) True trnaf-gaa_66
XR_005640439.1 other upstream 523461 23886824 ~ 23892301 (-) False rab41
TU144931 other upstream 1210078 24573441 ~ 24579099 (-) True G107864
unassigned_transcript_475 other upstream 1498749 24862112 ~ 24862184 (-) False trnav-uac_15
TU145115 other upstream 1916240 25279603 ~ 25282199 (-) False G107989

Expression Profile