RNA id: XM_039814303.1


Basic Information

Item Value
RNA id XM_039814303.1
length 3602
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120567342
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21116481 ~ 21121030 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATCACAGACATCAACCTGCTTCTAGTCCTGGACGACGAGTCGCCGCATCTTTGAAAGTTACTAAAGGGTTTTCATGGATTTAATGTTAACCAGTGGAGATATTTGCCCACCGAGAGTCAAGAACCATTGCCCATCTGCTTATTTGGTTGTTTCCATTGCATGAACACCGTTAAGTGCTAGCAGGCTAGCACTGGCTACGCTTCGTTGGCTTCCTTGTTTACACGTTAGCTTGCGAGCTAACGTTAAAGCTAATTAATCTAATGTCAGCTAACATCGTCCCGGACTGCGCTGCCTATTTAACGGCAACCTGTTTTCTTATAGCTAGCTAGAAGTTGACTATGTTTATGTTCTTGTACTATGCAAACTGGGTCCCTGCAATATAAATTACCGCATTGTTTTTCAACACTGCAACGTTAAGTAAAGGTAACGCAAGCTTAACGTTAACGTACAATAAAAGTCTTGACACCATAGCTCTATTGAGATATCTAAAAACGCCACATAGGATATTTAATCGCAAGGAGATTGGGTTATAAAAGCAAATTGCAGCGATAGATGGCTATTGGAAGTGGCGTAGCTACTTAGCATGGAAACATCTCATGGCAGTCCGTAGATGTCAGGGCAGAGGAGGGTTTACAGTGGGAACGTTAGCCACATCGCCCCTCAACTGTCTCCGGAGGCCAACAATAGAACTAAACATCAATCAGTTAACATTAAACCGTTATCCCTGAAACAAAGGGCAATGGAGTCTGTTAGGAGTGCTTTCCACGCTCAGCTGGCCACCGTCATGGACTCGCTTCTGGCAGCCGCTGTGTGCGAGATCGCCAAGATTTTTGAGAGCAGCCTGTGTGAACAGCAGGCGGAGCTAGCGCAGAAAACAGGGGAGATCTCCATCCTCCGAGGCAAGCTGGAGAAAGCGGAGAGGAGGCAGAAGGCGAAGGTTGGAGGGTGCGAGGAAGGAGAGATGTCATCAGGAGACAGAGAAGGAAGCTTAAGGCAGCAGACCCTCACAGGATCAGgaCTGAATGTGGGGAAGGATATTTCTTCTAATTCAGACCCAGCAGAAAGACTCAGTCAGAGCCTCAGCAGCCTGAAAGAAGAGGTCACAGGCCAGGATGGAGCTTCAGTAAAACATGAGGTCATACCCTGTCCTCCTGCTACAAAACGTGCTGGATCACACCCTACCCTGGGGTCTGTGGCAGTCCAAGTCCCAGAGGGAAACATTGCTGCTGGGGACCAGAGGCAGAGAGATACCCTGTCTGCCACACAAGCCAAGGCCAAATTGTCTCATTGGGATCAGGGCAGTGTAGACCACAGATCCCTCCAGAATCAAGCCTCCACcccttttctctccatctcccagAGCGGGCGTTGCTCTCCCAGGCCCGACCCAAGCCTAGCTCAACCAGGGGAGTGGTTACCGGGGTTGGACACCACCCGGGGTAGGGTGTCCGGTCTGGAGAACCTGCAGGCAGACGGCAACAGCTGCTCTGATCCAGCTAGCAGCAGCACTGGCACAGACACACCCTGCTTTCGACCAGGTTTTGGCTCTGACGAAACCAGCAACGAAGATGACGATAGCTCTTTTCCTTTCCTGGACCAGGAGCCTGAGAACCACAACTCCAATCAGAACTCAGTGCAGAGCCAAGGTGTGGGGCATAGGGGGGCTCGGCAGGTTCAGCCCCCCCAAGCCCCCTCTGGCGAATCACCATGGAGACCCCGAGATGACAGGGGGGGGAGAGGCCCCATCAATCACACACGGCGGGTCACAACGTTTGTCAATAGAGACCCTCTCCGACCACAGTCCAATTCACAGTCGCTCACGCTGCGACATACAAACACCCTCAGCCCCCCTCCAGCTCCCGGCGGAGGGAATGGACGACCTTACACCTGTCCATACTGTACCAAGTGTTTCACCTACCCCTCCCACCAGCGCAGACACCTTTTACGCCACACAGGAGTCAGACTGCATCCATGTCAGTTTTGTGACAAGAGCTTCCTCACTCCCTCTGAGCTTACTGTGCACACTCGCACACATACAGGGGAACGCCCTTTTGGCTGCGCTCAATGTGGTAAACGATTCGCCCGCAGCGGGAACTTAAGAGCCCACCAACGTGATGTTCACATGGGGAAGAGGCCCTTTGCTTGCACAGAGTGCGGGAAAAGATTTGCCCACAGGGGGAACCTGAGAGTGCACAATCACAGAGTCCATCAAGGAGATCCCTACTACATGGATGATCAGCAGGAGCCTGACATAGGCCCCAATCCCATttgaaaagatttaaaaagtGATGGCCCTGCACTttaattttgtttgcaaaataaaCCTTAGGAACTTCGGTGGGTCCCACCTAAACTTATTTCTAAACACTAAAAAGAGTATATAAGTATTGAAAGGTGCTGTACTCAAAAATatgatataataaaaaaaattgcctcTACATGGCAATCACAGACCATTCCCCCAATAGCCTACATGAAATACCTACGATCTTTGGCGGCcacatgcactaacatgcaCGTGTGGCCGGACtggctatcaaaacaaagaacagagctGCTCGAATTACACACCAGTGGTTGCGTTAGACTTTCTTGATTTCTTGAAAATGTACACCATCATTAATATCCTCTGCTCTCCTGTTTCaccgtaaaaaaaaatatgaaaagaagACTCAGCCTTTTCTTTACGTGAAGAGCGGATCTCTGTGGCACATACGCACCACTATCGTGCTGCTCTCACGCCTGGTGTAGccagaagaagagaaaagacaAGTGAAGTGAAGTCGTCAGTACCGGTTGCAAGCAGGCTCGAATTATTAAAGTTACCGTAGATCGCCCTCAGAGTTGTAATCTGTCAAAATGACGGATGGCCTTCCGAGTGTTCTGTCGTTGCTAAAAATATTCCATCAGTGACTGAAAATATTCGCCTACTGCGACCTCTGCAACACGCACGGAGgcagtgtgacttcattctctgctcaggatgcctttactccactacatctctaCATCATCAACATGTTGCAAcatcaaatatttgtttgctgctatattaatgtgaCTACAGCCCCTTTAAGGTTTTGGTTttatatgtgtttttttcaaatttgataTAGGGTAAACGTAAGATTAACCACCATCAAATTTTGTTATATGTAATTAATACACGGTCAAAGTAAATTTTATTtgagtgacttttttttccctttttttttcaaatatgattCAATGTAAGAATTGTAGGTCActctgaaaaagaaaactttgtatTAACTGTATTGTAAATGGCTGGATATAATCAACCATGAATAATCTGTTGTTGTAAAGAAAATAACTTTTCTCCAGGATGACACTATTCCAATGATATTCTTCCCTTATAAGTGAAAAGTCACTGAACAGATCTGAGCACCTTTTCATGACTTGAAGTGAAAGAACTGCAAATACAGGTTTTTAATAAAGCCAATAAAGAAAGTCTAGTTGGTATTAGATGtagatagggctgggtattgttaaaggtcccatgacatggtgctctttggatgcttttatatagacctcagtggtcccctaatactgtatctgaagtttctttcccgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143341 lncRNA downstream 11507 21101252 ~ 21104974 (-) False LOC120566885
XR_005640389.1 lncRNA downstream 43399 21070626 ~ 21073082 (-) True LOC120566356
XR_005640437.1 lncRNA upstream 28872 21149902 ~ 21164063 (-) False LOC120566633
XR_005640436.1 lncRNA upstream 39311 21160341 ~ 21164063 (-) True LOC120566633
TU143360 lncRNA upstream 58955 21179985 ~ 21182700 (-) False LOC120566634
TU143417 lncRNA upstream 131875 21252905 ~ 21256647 (-) True G106784
TU143431 lncRNA upstream 165284 21286314 ~ 21287781 (-) True G106793
XM_039813562.1 mRNA downstream 6414 21075757 ~ 21110067 (-) False LOC120566885
XM_039813563.1 mRNA downstream 11499 21075757 ~ 21104982 (-) True LOC120566885
XM_039813564.1 mRNA downstream 11500 21075757 ~ 21104981 (-) False LOC120566885
XM_039813565.1 mRNA downstream 11500 21075757 ~ 21104981 (-) False LOC120566885
XM_039813561.1 mRNA downstream 11500 21075757 ~ 21104981 (-) False LOC120566885
XM_039813178.1 mRNA upstream 172 21121202 ~ 21128560 (-) True LOC120566627
XM_039813177.1 mRNA upstream 172 21121202 ~ 21127159 (-) False LOC120566627
XM_039813186.1 mRNA upstream 7681 21128711 ~ 21131002 (-) True mif
XM_039813060.1 mRNA upstream 15586 21136616 ~ 21138438 (-) True LOC120566535
XM_039813190.1 mRNA upstream 55852 21176882 ~ 21178772 (-) True crybb1l1
TU142968 other downstream 882557 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1135348 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1633923 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 1897337 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 2425071 18687788 ~ 18691410 (-) True LOC120566257
TU143328 other upstream 6808 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 669223 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 998655 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1570130 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1869957 22990987 ~ 22993229 (-) True G107235

Expression Profile