RNA id: TCONS_00006659


Basic Information

Item Value
RNA id TCONS_00006659
length 6253
RNA type mRNA
GC content 0.42
exon number 9
gene id XLOC_003398
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19271557 ~ 19471758 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGATTTACACAATGACAAAATCGAATAATAATCAAACCCTCGTCTTTTTTGAATGAGATTAAAAACGGTCAAAATCAGTGATTCATGCAGATGCAACAACAGAACAGGTCTCTCACATTTACACCGGAATGTACCTGACATTTACAAGTTTTCTTTCAAAAACCGCTGCTGTCTCCGGAAATGCAGTAATTTCATTCACAAGCGCGCAGCCAAACGGATGGGACAGACCGAAAGAGCGCACGGCGATGAGCAGTTCTATATATTGACTCGCTGACCCGTTTCAATTCGCTTTAAGACTCATTTCTTCAAGCTGTCATGTTTGTTCGAAGCCTTAAAAAGAGAAACTCCTGCCGGTCGCCCACTGTGCTTGATGACCTAGAAAGAGGACAGCCATGCAACGTGTGTGGAGAGCAGTGTCCAGGCTTCATTCTGCATAAATGGAGGAAAATCTGTCTCCACTGTAAGTGCCCTCGTGAGGAGCATGTTGTGACTGCCATGCCTCTGGAGATGGAGAAGACGGTGACCAAACTGATGTACGACTTCCAGAGGAACTCTACATCTGACGATGACTCTGGCTGTGCTCTTGAGGAGTATGCTTGGGTGCCACCCGGACTCAAACCTGAACAGGTCCATCAGTATTACAGCTCTTTGCCGGAAGATAAAGTACCATACGTGAACAGTCCTGGAGAGAAGTATCGCATCAAACAGCTCCTGCATCAGCTTCCACCCCATGACAATGAGGTGAGATACTGCAACAGTCTGGATGATGAGGAGAAACGAGAGCTCAAGCTCTTCAGCAACCAGAGGAAGAGGGAGAACCTGGGCAGAGGAAACGTCAGACCCTTCCCCGTGACAATGACCGGAGCCATCTGTGAACAGTGTGGAGGACAGATCAATGGAGGTGACATTGCGGTCTTTGCATCACGAGCAGGTCATGGTGTTTGCTGGCACCCCCAGTGCTTTGTGTGCAGCATGTGTGATGAGCTGCTGGTGGATCTGATCTACTTCTACCAGGACGGGAAGATCTTCTGCGGTCGCCATCATGCAGAGAGACTCAAACCCCGCTGTTCAGCCTGTGATGAGATTATTTTAGCAGACGAGTGCACAGAGGCCGAGGGCAGGCACTGGCACATGAAGCACTTCTGCTGTTTCGAGTGCGAGACAGTTCTGGGCGGCCAGCGCTACATCATGAAGGAGGGTCGGCCCTACTGTTGCACCTGCTTCGAGTCCTTGTATGCCGAATACTGCGACTCCTGCGGGGAACACATCGGTATTGACCAGGGCCAGATGACGTATGATGGTCAGCACTGGCATGCCACAGAGGCTTGTTTCAGCTGTGCTCGCTGTAAGAAGTCTCTGCTCGGTCGTCCTTTTCTACCCAAGCAGGGTCAGATCTTCTGCTCTCGGGCTTGTAGTGTCGGCGATGACCAAAACGGCTCTGATTCCTCAGATTCTGCATTTCAGAGCGCCCGTTCACGTGAAGCCCGTCGCAGCAGCTCCAAATCCAACAAGAGCAGTACTGGAGGAAGTGGAGGAGATGGACACCAGAGTGGGAAAGCTTCAGCTATGCGTTTCTCTGCTGATGTTGACCCACTGTCTCTGCAAATGGATTTGCTCAGTCTGTCCAGTCAAACTCCTAGCTTAAATCGAGAATCTCCATCCTGGAAGACGCAGGCTGAGATGTTTGGATATGAGGGTCGTAATGAACTCTCCACAAATCCTCTTCATTTGCTCAGTCAGTGCAACATTCGGACTTCCTATTCCTCAAATCTGTCCCCTGGTCACCTATCAGATCCAAGGCCCAAGGAGCCTGCGTCTTCTAAGAGACCCCCTGTATCTGCTCTAAAAGGGAAGTCTTTGAATGAGAACTGGTTCCAGCAGGGACCAGAGGACTATTATCCACCTGCACTGCGAACCCAAGCGAGCTTTAACGAGGTTCCACACAACAGCTTCATGGATAAGCGCTCTGTAAGTCTGCATGTGTTCCAGAGGGAGAAGGAAAAGGATGTTGGGCCACAGATGAGCCGCAGCAGGAACCCCATCAGTGCACTTGGCTTTAGTGAACAGCTCACACCACTGGAACAAACACCACGCGGCTCTATGGAGTCACTGGCTCTATCTAATGCTAcagGCACCTCTGCAGATGGCGGCAGTAAAAGGCAGGAGCACTTGTCTCGCTTCTCAATGCCGGACTTGAGTAAAGATTCTGGCATGAACGTGTCTGAAAAGAGCAACATGGGCACCCTCAACTCCTCTGTGCAGTTCCACAGCTCTGAATCTCTGCGCAGCCTGAACTCGGCTCAGCCCTACCTGGAGCTCGAAGCTCCGGTCCAAGTCAGGTTTCCTGTGCAATACCCCCGAGAACCTTCTGGAATTAATGCTTTGCCGCCTGGTTTTGCCTATCAGGAGGAAGATCGCGTAAGTTTGGTTAGCAACGCCAATAATGCTCGTCTACCACCAATGAGCGAACGCACCCGCCGTCGTAGTATAGATCACGAAGAGCCACGCAGACGACACCACCACCATCGCTCCCGCCGCTCCAGGCGATCCCGTTCAGACAATGCACTCAACTTAGTCGCTGAACGCCGCCCAGCTCCGAAACGATCTCAACTTCATGCTCGTGAGGATTACGACCAGTTCCCTCTTCCCCGTGGATCTCGGGACACTTACGGAAGTGGCAGACTGAGGCAACAGCCTTTCAGACCTTGCCCTCGAACAACCTCTGACCTCACGCTTCAAAACCCCGCTCTCCACCGACACCAGGGTCCTTATTCGTGGGATCAGTATGATTACAATGACGACTGGTGCTCCACATGTTCCTCATCTTCCGAGTCAGAAGATGAAGGGTATTTTCTGGGTGAGCCAATTCCCAGACCCATCCAACTGAGGCACATGACTAGCGAAGAGCTGCTACGCAAATACAACTCTTCAGGACTCGGAGCATCCGGTCAATTCGGCAGTCGAGGACAGTTACATATGCGCAAACGTAGGAAGAGCAAGAACTGCATTATATCTTGAAAGTCACAACTGCTGCTGAGTCCTGCACAACATTGCACAAGATTTTCTTCTCCGTCAATATAGTTCGAAAGGCTTTTCAGTGTTGTGAGGTTACCAGTGAATAATACGCAGTAAATTAATTTGCTCACGGCTCAATTGCATATGCATGCTTCCCATGTGATATTTACAAATGAATCTGGAtgttacacttttatttttaaggaCTTCTTCAATCTGCAGCACTGTTGCCGCATTCGTTACAGCTAATGTGCAATTTTTTCTATGTAATCCATTCAGGCACAGTGATGTTTTTTTGTATGGTGTTCGCTTTGGGTTTAATGCCCCTTAATAAGATGTATATACGCAAATTAATGAAGAAATACACTAAGTTAAGGATGTAATGTAAATTATCTGTAAATGATGTAccacatatttttatattttgtatcaaTAGAATCATTTATGTACTAAACATACTGTAGAGAACATAGTAAAGGCATGCACGTtcatttgctgatttttttttttttttgtcctgtatCAAAAATTAAAGAGTATTTCTGTGAGAGATGTGATTGACGGCTCTTGGTTCTTCATCATATGTGATCTCTGACTCACAACAGACACCAGCACACTCGCCATCTGCTCAATGTATTAATGCAGAAGACCACAGTTCAATGTTGGATCCAAATGGCTCGACTCGCTTAGTGATACACCTCATTGCTAATGACAGCTTATGAAAATTCAAGGATTCATTTCCAGTTCATTTTTACTGGGGATTTTAAAGGTGGGGAAGCGTTTTTACATCCCTAGCTTTAACTTTGAATTCCAAACCATAATTCTGTCAATAATGCTGCTGTGAAAGCAATAAGATACACGAGTATAGTTTTACAAATTCAGAATGCTATTTTAGCCGCTGGCTAATACGCTAATACATATGTGGTTTTCAGATATGCATACATAAACCATGACCGCAGTCTCTTGTGCTATAAGACTGAAATATGTATCTGAACGTATTTAAAAGTTACCAGATTTAATGTCCCCTACGGGCAAGAAATATGAGACGCTTTCTGCTACTGTGTGAGGAATGTTTGTCCTCATATATACTGAGTAGTGGTCAGAAGAGTCTTGAAGGAACGTTTAGATTACGATCTTATGGTATAACCAGCTGCATAAACCTCATCTATGGACAGATTTGCTTTCTGTATCTCTGCCGACTTTCCTTCACTTCTTCTATCGTTCTGTTTCCTCTTCTTTACCTCAGAAATTGATGAATGGCAGTTAAAATTATAACATCTATTGAAAAGACAGATTTGTACTTAGAAACTGATGATAACGTAATGCACAGCTTTCTCGTAAGGCATTATATGTTTTGAAAGGTTTCAAAAGATTTCTAaattaattactaaattaatGTAATGATACAACATGGTTCATTTTGGTTAGGTTTATGAAAGCCATAGAGCAGTATTCAAGCTAATAACTTTGGGTTGACAGAATGTTTTGAGAACATTAGTTTCTGTTTCCCAGAAccaggcatgggatgataaccggtttcaaggtattCCGCGGTTTGCAGAGGTCAGTTTTAAAACTGCCAGAATTTTCTGTTTTACCGTTCCTACGCTATATgtccagtttttgttttttgtttttttttagggcaacaggaTCTCCAACAGAAAAGGACCCTCCACATTAAAAactactggtccaaaatattttaaatgtttcttaaaataaaatatgttgtattcaATATAGAgaaaaagttgctgtttttttacccagacatttaaaaaaactaattttagtgcagtaatcacaataccatgaaaccggTCCCATGTACCCCTATACCatacttataccggcccatgcctatgtTCAAAAAATGggcttttgctgtttgttcaaattacttatttcaAACCTCCCACAGATTTACACGGGCAACTGCTAATAgtgactgtctagtgccaaagtgtaagacctcatttagtcaatctgtcttctctgtaaaggaagccaaactgtggaatgatttaccggttagcttaaaatcagaaagtaataaaCATGTTtagtagtgtttttaaaaagtggttaaaaacaaaacagcagtgtttgcacaaatagtctactgttagttGTTTTGATCGTGTCACCTTTGCTTTTGCCTTttagtaattttatgtaaaaaattgtaatgttgtgtatgtgtttttattttatttccattttgttaattttttaagcCTCttggtgttgagaattagcaagtttgctaaaacacttagataaatgcatttggttgtccggTGTAATTGTGATGTtgctgtcaaataaataaataataaataaataaatttaaaattctaTTCAACATTGAAGTTTTGGAGTTAACAAGATGTATACAAGGTCAAAGCAACGCTTCTAAGATATAAAATAGAAGTAAAAGTGCTTGTCATAATGTACATCTGCAAAGAAGTTTATTTTCACTTCAGAAAATAGTCAATAGTttttatttctattcatttgGAATTATCTAACtgtaaatattgatttatttcgTTATTTTTAAACACATAGCAGTAATTTTACCAGAGGCTCAGATTTTCTTGGCTAAAACAATTGCGACTTGTAATTAGATTTTGTCTATGATTTTAACCCATTTTTAGGCATTAATTACTCAATTATACCATACTTATAATGGCCCATAGAACATTGTTTAGGACATTGCTTTTAGGTTAGGAGAATGTTTCTGGAACATTTCATTTACAGTATGAAGCAATGaaattgtttgtgtgtgcttttgtttaGTTGTTAGGTTGTTTGCTTTGCTTTAGTTTTACCattgagtttttacattttttagtcaccaaaaataAAAGGCATCTGCAGATAACATTCCCAGAACATTTATATTTGTTGGTGAACATTCTGTTTGCTGTGATAATTCAGTCATGACTCAGTCAGTTGTTCAGAATGTTTTCTGctcgttttctttttctgtaaTGTAAGCCAGTATTACATATAATATACAACACAATATACAATATTGCATATGATAAttctaaaataatatttcattcattttcttttcggcttagtccctttattaatccagggtcgccacagcaaaatgaaccgccagtttatccagcatatattttacgcagcagatgcccttccagctgcaacccatcactaggaaacacccatacactcccattcacacacatacactacgg

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060271 cilium assembly biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030724-6 Predicted to enable zinc ion binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and neural retina development. Is expressed in several structures, including anterior neural keel; immature eye; mesoderm; nervous system; and neural tube. Orthologous to human PRICKLE2 (prickle planar cell polarity protein 2).

Ensembl:

ensembl_id ENSDART00000181679

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006647 lncRNA upstream 440534 18832913 ~ 18833246 (+) True XLOC_003395
TCONS_00008585 lncRNA upstream 531677 18741027 ~ 18742103 (+) True XLOC_003394
TCONS_00006646 lncRNA upstream 565721 18702362 ~ 18708059 (+) False XLOC_003393
TCONS_00008584 lncRNA upstream 565721 18704129 ~ 18708059 (+) True XLOC_003393
TCONS_00008583 lncRNA upstream 1313690 17957279 ~ 17960090 (+) True XLOC_003381
TCONS_00008586 lncRNA downstream 1416352 20888110 ~ 20890881 (+) True XLOC_003405
TCONS_00008589 lncRNA downstream 1456483 20928241 ~ 20930324 (+) False XLOC_003407
TCONS_00008588 lncRNA downstream 1456483 20928241 ~ 20930324 (+) False XLOC_003407
TCONS_00008587 lncRNA downstream 1456483 20928241 ~ 20930324 (+) True XLOC_003407
TCONS_00006682 lncRNA downstream 1713711 21185469 ~ 21186684 (+) True XLOC_003413
TCONS_00006657 mRNA upstream 45978 19159083 ~ 19227802 (+) True XLOC_003397
TCONS_00006656 mRNA upstream 54831 19157879 ~ 19218949 (+) False XLOC_003397
TCONS_00006655 mRNA upstream 184266 19080400 ~ 19089514 (+) True XLOC_003396
TCONS_00006654 mRNA upstream 197286 19068442 ~ 19076494 (+) False XLOC_003396
TCONS_00006653 mRNA upstream 205346 19060278 ~ 19068434 (+) False XLOC_003396
TCONS_00006663 mRNA downstream 30539 19502297 ~ 19511548 (+) True XLOC_003399
TCONS_00006664 mRNA downstream 131493 19603251 ~ 19611356 (+) True XLOC_003400
TCONS_00006665 mRNA downstream 308959 19780717 ~ 20040154 (+) False XLOC_003401
TCONS_00006667 mRNA downstream 309295 19781053 ~ 20039784 (+) False XLOC_003401
TCONS_00006666 mRNA downstream 309295 19781053 ~ 20039784 (+) True XLOC_003401
TCONS_00006652 other upstream 182968 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006645 other upstream 597223 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006630 other upstream 1289006 17964689 ~ 17984774 (+) False XLOC_003382
TCONS_00006627 other upstream 1760148 17441957 ~ 17513632 (+) True XLOC_003377
TCONS_00006626 other upstream 1762043 17441887 ~ 17511737 (+) False XLOC_003377
TCONS_00006668 other downstream 561308 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006677 other downstream 1580470 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006686 other downstream 2178764 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006698 other downstream 3242257 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006700 other downstream 3925512 23397270 ~ 23397385 (+) True XLOC_003428

Expression Profile

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