RNA id: XM_039814359.1


Basic Information

Item Value
RNA id XM_039814359.1
length 2496
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC120567397
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19376204 ~ 19384972 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaagttcgcCCATTCTAGTTTTCTGTCCGGTGTCGACAGTAAAGAAGTAAACCCCCAACACACAAACTCGACTGTAACAAAGAAGGACATTGCTTTGAAgacaTGTTGCTATTATTCGTGACTACTGTTTCGTGCGTCGTGTTTGGTGTTGTACTTCACTCCGAAGAATGGTGGATCCAGGAAACTAGTGATGGATAAGGACGAGGCAAAGGACTCACGCCTCCAAATTTCCATTGGCTCAGTTGTACTCACAGATTTGACAGAAAGAGATGAGGGAACGTTTTCTGTCTCAATTAATGATGCTATGCCATACGATATTATCAAACTGGAAATTTTGGATTGTGCTTACCACGAGTATAGGACTTACGGGAGCCCATATTCCTCTGTTGTTCCTACACAGACTGAATACATAGAATTCCTTCCCTTTTACAGTGAGGAACTGCCGAGGGTCCTGTGGAATCGAACCGACCCTCAGGCCAATAAGGGAAGCAGATTGCAGATGAAGGATTCTATCTGGGAGATTAAGAGCCTCAATCAGGCAGATGGCGGCTACTAcaacttcagaaaaaaagacaaaacagtgCTGTCTAGGTTACGGATTGTAGTAGGAGTGAACGACAGACGCTATTATACAAAGGTGAATGAGCGGTTCGTCATCGAAAATCCTTCGCTCGATGCCACATGGACTGTGACTTTTACACCGGCAGGGGAAGTGGAAAAGAACACATTGATGGAAGCAGGCAATTTGGTCACAGACGATAGGAGGATTCGGATCATGCGTAATGGCATAGAGATTGATCCTGTAAATATCATAGACTCTGGCACCTTTGAGTTCAGAGATCAGCAAGGCTACCTGGCCAAGATTGTGGAACTGAGGGTAGAAGATGAACTTCTTCCTTCCGTCCTTCATCCATATGCTTATATTGCGATCATTGGCGGGATTATCTTTGCGGTGGTTGTCTGCTGTTGCTGTGTGAAAAAGTGCTGTTGTAAAAACAGCTCTTCCAAAAGGCACGAGTCTGCTCCTGAGACTGAAGCAGCACCTGCTGTGTATTACCATGATTTGATTCAACCTGCGGGCCCAAGTTACTCTGTTGCACCTGTGCCAGATAACTCTTATCAGCCAATGAATTCCCTTGTTTCTGGAGAACATACCACTACCTCCCTTGAGCCATCGGTTGAACCTCTAGGAGGGCAAGGAGGCGATCCAGCTCCTACACTCGGCTTTGATTGTCTCTCCTCAGACCCTGTGCCAAAGTTTGAGCTCAAAGGACTGTCCATTCCCTCTGCACTCCCCCTCGTTTCAGACTCAACTTTCTGTGATGTTTACACCTCAGATAAACTCAACTTTCTGTAAATTCAAGTGATGCAGAGTAGAATTTGGGAATACAGCCATTTCAGTGTTTCATTGCGTGAAAAAATTAAGTTCCTGCAAACTTAAAGGCGTGGTAATAGGTGTAGAGAAAAAGGACCATGTATTCCTGTTTAATATGGAATATAAATGTGTTTCATAAACTCAGGTTATAATTAAAGGGCATAACTTACACTTTATGCTGCTGCCAAAGATATCAAAGAAAGGGGAGACAATGTTACAGTGAGGACTGGAAGTGAGTCTGGGTAGCAGATTTTACAAATTGAGGACTTCAAACTGACTTCAACTAgtctagaaatctagacacaccctaatggcagcaaatgtaatttgcagccaggaccaacatcttgatgtgggtctggcttctcagGCTTCTCAGGCTAGACTTCAACACTCATGGAGATCAAAATGCGGCACTCAGCAATTTACTTATATATTCTTTTTCATATGGTTGTTTCAAACCCTTATGCCTTCAGCCTCATATATAGCAACTTGTTGTGTGGCTTTTATCATTACATTCTAGAAATGATAtatgatattttttttgtctttatgctttgtattaatttcaAGTATTACACAAGGAAATGTCATGTTTTGAAGAGCTTTTTCCATCCTTCTTGCAGCTTTGATAAACTACCTTGATCATTATGCCATGTAATCAAATTGTAATATTTGATACAAATAAAAGATATGTAACTATACTTACTTTTACGTTTTTATGCCTCCGCGCCGACGACAGCAATGGCCTGAGGcaacttcactgtgacatcTAAATGATCTGCAAAAAAACGTTTCTGGTATTTATTCAACGCCATAACTCAGGAGGGGAGACTGTGACCAAATTATACATTTGGTCCGATTCCGGGGTGGTGACACTAATCTCAGGTGCCCACCTTGAACCTAACTTCATGTTGGTGGTTTAAGGTATTGAAAACCTTTTTTCACAATCTTTTTCTTAGCAATGGGGAGTGAACGTGAATATACTATTTACTTCTAAAGTTggtacttttttgttgtttgccaAGAAAGATGTGTTTTTCCTGTTGTTTTGATCTTCTGACTTCTTCATTTGAATTGTAAGGGCTAACTGTTGAATAAAGATCATGTCACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142699 lncRNA downstream 54898 19320263 ~ 19321306 (-) True G106248
TU142694 lncRNA downstream 61788 19312809 ~ 19314416 (-) True G106243
XR_005640451.1 lncRNA downstream 87735 19287076 ~ 19288469 (-) True LOC120566721
XR_005640450.1 lncRNA downstream 110728 19262913 ~ 19265476 (-) True LOC120566720
XR_005640452.1 lncRNA downstream 113332 19262030 ~ 19262872 (-) True LOC120566722
TU142731 lncRNA upstream 9838 19394810 ~ 19395994 (-) True G106276
TU142712 lncRNA upstream 14676 19399648 ~ 19450124 (-) True G106259
TU142749 lncRNA upstream 50868 19435840 ~ 19436917 (-) False tomm5
TU142770 lncRNA upstream 92196 19477168 ~ 19497081 (-) False G106303
TU142771 lncRNA upstream 110233 19495205 ~ 19557572 (-) True G106303
XM_039814361.1 mRNA downstream 2221 19365820 ~ 19373983 (-) False LOC120567398
XM_039814360.1 mRNA downstream 2221 19365820 ~ 19373983 (-) True LOC120567398
XM_039812548.1 mRNA downstream 41506 19331706 ~ 19334698 (-) True aldob
XM_039812734.1 mRNA downstream 71139 19301805 ~ 19305065 (-) True arsia
XM_039813322.1 mRNA downstream 93530 19277131 ~ 19282674 (-) True LOC120566716
XM_039812910.1 mRNA upstream 29696 19414668 ~ 19426862 (-) True si:ch211-203d1.3
XM_039812911.1 mRNA upstream 29696 19414668 ~ 19425632 (-) False si:ch211-203d1.3
XM_039812909.1 mRNA upstream 47344 19432316 ~ 19435195 (-) True LOC120566441
XM_039812915.1 mRNA upstream 50867 19435839 ~ 19436927 (-) True tomm5
XM_039812922.1 mRNA upstream 79499 19464471 ~ 19469408 (-) True slc25a51b
TU142573 other downstream 157060 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 684794 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1070509 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1384333 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1580981 17783560 ~ 17795223 (-) False LOC120567448
TU142773 other upstream 95046 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 587443 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 845936 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1742866 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2405281 21790253 ~ 21790725 (-) True G106988

Expression Profile