RNA id: XM_039814360.1


Basic Information

Item Value
RNA id XM_039814360.1
length 2001
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC120567398
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19365820 ~ 19373983 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGTACAAACTCACACACCGTCCTATACATCTGTGACACACAcccatccacacacactcacactcacagaaCTCGACTGTAACACAAAAGGAAATTACTTTGCAGacatgttattgttattatacgTGACTACTGTTTCCTGCGTCTTGTTTGGTGGTTCATCTGCTGAATTTTTTGAAAAACGTATGTGCTATGGCAGAACTTTGAGATTGCCATTTAGTTTTACCCCACCTCTTTTCAATGGACAGTTGTACTTCACTCCGAAGAATGGTGGATCCAGGAAGCTAGTGATGGATAAGGACGAGGCAAAGGAGTCACGCCTAAAAATTTCCATTGGCTCAGTTGAACTCACAGATTTGACAGAAAGAGATGAGGGAACGTTTTCTGTCTCAGTTGATGATGCTATGCCATACGATGTGATCAAACTGCAAATTGTGGAGTGTGCTTACAGGATGTACAGGAATTACGGGAAATCATATTCCTATACTGTTCCTAGACAGACTGAATTCGTGGATTTCACTCCCCTTCACGGTGAGGACCTACCGAGGGTCCTGTGGAATCGCACCGACCCTCAGGACAATAAGGGAAGCAGATGGCAGATGAAGGGTTTTATCTGGGAGATTAAGAACGTCAATCAGGCAGATAGCGGCTACTAcaacttcagaaaaaaagacaacactttgcTGTCTAGGATACGGCTCACAGTGAAAGagaacaatagACACTATAATACGAATGTGAATGAACGGCTCCTCATCCAAAATCCTACGTTCGTTGCCACATGGACTGTGACTTTTACACCAGCAGGGGAAGTGGAAAACAACACATTGATGGAAGCAGGCAATTTGGTCACAGATGATAGCAGGATTCGGATCGTGCCTAAGGGCATAGAGATTGATCCTGTAAATATCATAGACTCTGGCACCTTTGAGTTCAGAGACCAGCAAGGCTACCTGGCCCAGATTGTGATAGTGGAGGTAGAACTAGAACCTCTTCCTCTTGTCCTTCATCCATATGTTTATGTTGCTATTACTGGCGGGATTATCTTTGCGGTGGTTGTCTGCTGTTGCTGTGTGAAAAAGTGCTGTTGTAAAAACAGCTCTTCCAAAAGCCATGAGTCTGCTCCTGAGACTGCAGCAGCACCTGCTGTGTATTACCATGATTTGATTGAACCTGCAGGCCCAAGTTACTCTGTTGCACCTGGAGAACATACAACTACCTCCCTTGAGCCATCGGTTGAACCTCTAGGAGGGCAAGAAGGCGATCCAGCTCCTACATTCGGCTCTGATTGTCGCTCCTCAGACCCTGTGCCAAAGTTTGAGCTCAAAAGACAGCCCATTCCCTCTGCAGTCCCCCTCGTTTCAGACTCAATTTTCTGTGATGTTTACACCTCAGATAAACTTAACTTTCTGTAAGGAGCACACCGTACATTCAGAGATGCAGAGTTGAATTTAGCATTGTGCATTGTGACTAGCGGAAATAGAGCCATTTAAGTGGTGTACAGAAAAAGGACCATGTATTCCTGTTTAATATGGAATATAAATGTGTTTCATAAACTCAGGTTATAATTAAAATGCATAACTTACACCGTATGCTGCTGCCAAGGATATTGAAGAAAGGGGAGATGATGTTACAATGAGGACTGAAAGTGAGTCTGGGTAGCAGATTTTGCAAATTGAGGATGTCAAACTGACTTCAATACTAATGTGGATCAAAACGCGACACTCAGCAATTTAAACCACTGTCACCAGGTTTACTTTTAAACCCTTGTCATGTTCCTTCAGCCTCATATATAGCAACGTGTTTGTGTGGCTTTGATCATTACATTCTGGGAAATTATATATGatattatttttgtctttatgCTTTGTATAAATAGTCCTACACAAGgaaatgtaattttttgagaaaaaaactatTCAATTTCTGTGGGACTGGGATCGCACTCAGAAGTGTAAAGAATTTTATAAGTCAGCAAATATATAtgttcatttttgta

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142699 lncRNA downstream 44514 19320263 ~ 19321306 (-) True G106248
TU142694 lncRNA downstream 51404 19312809 ~ 19314416 (-) True G106243
XR_005640451.1 lncRNA downstream 77351 19287076 ~ 19288469 (-) True LOC120566721
XR_005640450.1 lncRNA downstream 100344 19262913 ~ 19265476 (-) True LOC120566720
XR_005640452.1 lncRNA downstream 102948 19262030 ~ 19262872 (-) True LOC120566722
TU142731 lncRNA upstream 20827 19394810 ~ 19395994 (-) True G106276
TU142712 lncRNA upstream 25665 19399648 ~ 19450124 (-) True G106259
TU142749 lncRNA upstream 61857 19435840 ~ 19436917 (-) False tomm5
TU142770 lncRNA upstream 103185 19477168 ~ 19497081 (-) False G106303
TU142771 lncRNA upstream 121222 19495205 ~ 19557572 (-) True G106303
XM_039812548.1 mRNA downstream 31122 19331706 ~ 19334698 (-) True aldob
XM_039812734.1 mRNA downstream 60755 19301805 ~ 19305065 (-) True arsia
XM_039813322.1 mRNA downstream 83146 19277131 ~ 19282674 (-) True LOC120566716
XM_039814359.1 mRNA upstream 2221 19376204 ~ 19384972 (-) False LOC120567397
XM_039814357.1 mRNA upstream 2221 19376204 ~ 19384972 (-) True LOC120567397
XM_039814358.1 mRNA upstream 6809 19380792 ~ 19384972 (-) False LOC120567397
XM_039812910.1 mRNA upstream 40685 19414668 ~ 19426862 (-) True si:ch211-203d1.3
XM_039812911.1 mRNA upstream 40685 19414668 ~ 19425632 (-) False si:ch211-203d1.3
TU142573 other downstream 146676 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 674410 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1060125 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1373949 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1570597 17783560 ~ 17795223 (-) False LOC120567448
TU142773 other upstream 106035 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 598432 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 856925 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1753855 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2416270 21790253 ~ 21790725 (-) True G106988

Expression Profile