RNA id: XM_039814384.1


Basic Information

Item Value
RNA id XM_039814384.1
length 1748
RNA type mRNA
GC content 0.39
exon number 7
gene id eif4ea
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 29511696 ~ 29519263 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGAGTACCAGATGGCCCAATCATCTATTTAACACACGCCAAAAACTGACTGTGATTTCCAGAAGATGGCGACCGCTCTGGTGGTGTCAACTTCGGTTCCTGCTCAtcctgaaaaggaaaaatgtgaaACAATAATTCAAAAGGTTATGAGTCCTGAAGCATACATCAAGCATCCATTACAAAACAAGTGGGCTCTTTGGTTTTTCAAGAATGACAAAAGCAAAACATGGCAAGCCAACCTTCGTCTGATCTCAAAATTTGACACTGTGGAAGACTTCTGGGCATTATACAATCACATTCAGCTATCAAGTAACTTGATGTCTGGCTGTGACTACTCATTGTTTAAGGATGGGATCGAGCCAATGTGGGAGGACGGACGGAATCGACGAGGTGGCCGCTGGCTGATAACTCTGTCCAAGCAGCAGCGTAGAGCAGACCTGGATCGGTTCTGGTTGGAGACGCTCTTGTGTCTTGTTGGTGAAGCTTTTGATGACCACAGCGACGATGTGTGCGGCGCCGTCATCAACGTCCGAGCCAAAGGGGataaaatcgcaatatggaccaCAGACTTCGAAAACAAAGATGCCATCACACACATAGGtcGTGTTTACAAAGAGAGATTAGGCGTTCCTCCAAAAGTGATCATCGGGTACCAGTCGCATGCAGATACCGCCACAAAGAGCGGCTCCTCAACCAAGAACAAGTTTGTTGCCTAAGGACTGTTAACCAGTATCATCAACCATGCCTTTTTCTTTTGCCAGCATAGTTTTCTATAATTTTTCTGACATGTTTATCCACTACCAAACATTTCAAGTGGAGACAACATTTCTTCCTTTCGGTTTGCCTATTTGTTGCTACTGAACCAAAGCTTTTGTTTATGGTAAGGGTATGTGCAGTTAAAATGTAGCACTATCGTCTGAGAACTTGATTATTTTCGTGGTGGTGGGCTGAAGATGAGTAAAAGATGTTTTGATGCCCacgtttcattttcaaatgcagCTGCATATTTGTGGggaatttatttcatttgtcacCCCCTTAGTGTATGTCAGTTATTTTCTTAAAGTACTTAACATTAAAggcaaaaaagaacaaagtaAAACATGTTCTACTTTGGTATAAACTAGCTCTTTATTACTCTAATGCCACACAGTCAAATTACAATAAACATGTATGGCTTTATCGCACATATAGTTGCACGGTGGAATTTTAAACCATACATTGTGATCAAACCCACTACTTCTGAAAGTTTACACATTGACAGAATACcttttttaaaccaaattgCACCGTGAAGCACACTAACTATGTGCCTCAGATTTATCACTGGAGTAAATGCAAGCCGTTCATGCCTAAGTTTTTGATGTACTTATTCCTCTTGTACACAAATCTCTCAAATTTTTTTGAGTTTCAGAGCACAAAGATGTCAATGATGAAAACAGGATTTTGTATCGCCGTATGTCCGTATGTAATGAGGATATTTTCCAAATGTACATATTGTTGGATATGTACGATGTTCAGTTAAAAAGTCGACTTGTTTGTTTGGTCAGTTTTATTGATCTACTGCTTTGATGAAGTTTACAAAGTAGAATTATTTCCACTCcagattttgttttgattgtggcataagaaaaaaaaaaaatagtttgggAGGGATTGAACTGTGCCTTTAATGTAACACATTGCCTGATATTTCTCAGCAGTAAATGTATAAAGGAGTGATGTAAATAAAACATGTACAGTTTAG

Function

GO: NA

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145861 lncRNA downstream 237742 29273594 ~ 29273954 (-) True G108560
TU145845 lncRNA downstream 582791 28833175 ~ 28928905 (-) False LOC120567081
TU145844 lncRNA downstream 582791 28921383 ~ 28928905 (-) True LOC120567081
XR_005640516.1 lncRNA downstream 582803 28833184 ~ 28928893 (-) False LOC120567081
TU145837 lncRNA downstream 703705 28797622 ~ 28807991 (-) False cxcl14
XR_005640541.1 lncRNA upstream 34172 29553435 ~ 29750511 (-) False LOC120567321
XR_005640540.1 lncRNA upstream 34172 29553435 ~ 29750511 (-) True LOC120567321
TU145907 lncRNA upstream 34196 29553459 ~ 29750536 (-) False LOC120567321
TU145909 lncRNA upstream 107393 29626656 ~ 29750536 (-) False LOC120567321
TU145908 lncRNA upstream 131998 29651261 ~ 29750536 (-) False LOC120567321
XM_039814371.1 mRNA downstream 276097 28989623 ~ 29235599 (-) False lingo2
XM_039814372.1 mRNA downstream 276097 28989623 ~ 29235599 (-) False lingo2
XM_039814369.1 mRNA downstream 276097 28989623 ~ 29235599 (-) False lingo2
XM_039814370.1 mRNA downstream 276097 28989623 ~ 29235599 (-) False lingo2
XM_039814373.1 mRNA downstream 276097 28989623 ~ 29235599 (-) False lingo2
XM_039814287.1 mRNA upstream 4308 29523571 ~ 29527992 (-) True LOC120567329
XM_039813833.1 mRNA upstream 9079 29528342 ~ 29531658 (-) True gar1
XM_039814431.1 mRNA upstream 262640 29781903 ~ 29808038 (-) True egf
XM_039814482.1 mRNA upstream 291859 29811122 ~ 29818291 (-) True lrit3a
XM_039814247.1 mRNA upstream 300526 29819789 ~ 29841438 (-) True gpm6aa
TU145691 other downstream 1488467 28021737 ~ 28023229 (-) True G108433
TU145627 other downstream 1672589 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other downstream 1672589 27837848 ~ 27839107 (-) False LOC120567057
unassigned_transcript_477 other downstream 1732482 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 2249576 27258247 ~ 27262120 (-) False LOC120567151
TU146164 other upstream 1141649 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 1150268 30669531 ~ 30670849 (-) True G108781
XR_005640397.1 other upstream 1868444 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 1911757 31431020 ~ 31485976 (-) True LOC120566557
TU146455 other upstream 2320279 31839542 ~ 31844234 (-) False tlx2

Expression Profile