RNA id: XM_039814393.1


Basic Information

Item Value
RNA id XM_039814393.1
length 2284
RNA type mRNA
GC content 0.50
exon number 12
gene id dele1
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19569535 ~ 19577846 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGACAGCATCTCGTGACAGATTTTATTTACCAGCAGCcaaactgctgcagctggagCGAGAGCCGTCGGCTGCTTCATGGGGCCAGAGTCCGAGACCCACATGAATCTAAACATGCCTTTTCGGAGACAAGTCTTTAGTTAAAGCTGCCGTAAAAGACAAACCATGTGGAGAGTTCAAGGTTTTGTTGGAAGAGTTCTGCACCGATGCCATGGCAGCACCCCCCTGCGACTTCCCCAGAACCAGGGGCAGTCTCAGGGACTGGGGGAGGTTGAGGTCATCAACAGTTCAGCTGTCCTCTCCAGGTCTCGACACTCCTCTGACATCAGCTCTCAGaaagaggaggatggagagaggaggaagaaacaGAGGACCTTTCAGTTTGGCTATGCTGAGCTTCCACGTTACACAGCCCTGGATGCTGTGGGATGGGGTGCTGCAGCAGTTCTGTTCATGCAGATCTGCAGGAAGATCCACTCCCAGTTCTCCTCAAGCACTGAGCCGAATCCGATCCCCGGAGCCCTGACAGCACCCTCCACTCTGCACAAGTGTGGCTACCGCATCCTGCTGGAGATCTTGTCTAGACGAGACGTCCTGTCCAGAGGAAGCAGTGTGTTGTGTCTGCAGGGGGTGCCAGAGAGACAGGACAAAGACCAGTCTCTGAGCAGCAGTTCAGGTGACTCCAGTCTCCACAGCAGCAGTGAACAGGACCATCTGACTGCTGACTGCTCCCTCTGTGACCAACAGAGGGCACTCCCAAACCAGGATTCTCCTATACCTGAGGAACCACTTCTGTCAGCATCCTGTCCTTTGCAGAATGATGCCAACCGAGACCACACAGAGACTACAGATGCTAATGACAAGGACATGTTGTCTGATGAGGAGAGGCTGGCAGGAGCAGCATTGAATCTCAGACATGTGGGCGAAACCAGCATTCCCGTTATCCTCAACATCATTGGTCTACAAAGTTCCAATAGTGAGAACTACGAGGAAGCTTTTACATGTTTTGTAGCTGCAGCTCAGCAGGGTTACGGCAAGGCCCAGTTTAACACGGGTGTGTGCTACGAGAAAGGCAGAGGAGTCAGCAAGAACAAAGAGAAGgCTCTGTATTACTACTGGCAGGCAGCGGTTGGGGGTCACAGACAGGCTCAGTACCGCTATGCAAAGCTGCTCCTGACCAGCAGGGGGCACCAGAGTTTAGAGGAGCTGAATACAGCCATCAACTTACTGGAACAGGCTGCTGCAGCTGGACTCACCAAGGCTCAGGTCTGCCTGGCCTCGGTCTACACTCAGGAGCCGGTGAGAGACGGGAGCAGGTCTGTCCACTACCTGAAGATGGCTGCAGAGAGCGGAGACGACACCGCCCTGCTGTTCCTGGGTCAGTGTTTTGAGAGCGGCATTGGGGTGCAGCAGAATCTGAGGACAGCGATTGAATACTACAAACGAGCGGCTCAAGCAGGCAACAAGCACGCTAAAAGCTTAGTGACGCCTCCTAGTGATACATTCACAGAAGATGCCGTGTTGCGCTCCATCCGTTCAGCTCCATGTTTCTCTGCAGCCGACCGTCAGCTCCAGCAGCGGCTTTCCTCTCTCGGCAGTCGCGTCTCTCCCTCCACCAGTCGCCCCGTCACCCTTCCCCTACTGCCTCACTCGTGGAGCACCGGGAGCCTGTGTGCCCCCCCGCCGCTGTCCTCCACGCCTATTCACCTCCACCCCAGCAGTGAGGGAGGAGCCTGCCAGTGGACTGTAGGGATAGGATAGTTTACTGAGCAGGTCCAAATGAGGAATGTATTTCATAGCGTGAATGTATTTTCACCAGAGGAGAAAGGTCAAAGTGTCTTAGGTGTGTACATATTGTGAAGTCTGGATTAGATTGAATAgatgtatttacatttatatatattttatacctTTTATATACTTGTATATATGAGTAGACATTATGGTGTTTAAGATTTGTGTTTTTGAAAGTCTGAAAGAGTTGTTGGATACAAGGTCTTATATGTAGAATGAGGaggtttttttaattatttgtttctatttagttcttttttttttgttatataagTTAATGTGATCTAGGTGCCTTTTAATTAGTGTCATAGGTTAACCCTCAATAAAACCATTACCATCTTTGTAAAAGAACAACTATAGAAGTGACAAAGGGAAAAGCTTTGTGATAGTCCAACCTTAACTTTAAACATGCCAAAGTGAATTATGATGCACTGTAAGGAGGATGTTGTTCTGTCATGGACACATGCTAagtaaaactatttaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142771 lncRNA downstream 11963 19495205 ~ 19557572 (-) True G106303
TU142770 lncRNA downstream 72454 19477168 ~ 19497081 (-) False G106303
TU142712 lncRNA downstream 119411 19399648 ~ 19450124 (-) True G106259
TU142749 lncRNA downstream 132618 19435840 ~ 19436917 (-) False tomm5
TU142713 lncRNA downstream 169040 19340494 ~ 19400495 (-) False G106259
TU142831 lncRNA upstream 279250 19857096 ~ 19857367 (-) True G106349
TU142887 lncRNA upstream 367809 19945655 ~ 20052690 (-) True G106378
TU142872 lncRNA upstream 384108 19961954 ~ 20007579 (-) True G106367
TU142882 lncRNA upstream 462251 20040097 ~ 20055141 (-) True G106375
TU142883 lncRNA upstream 472966 20050812 ~ 20055141 (-) False G106375
XM_039812926.1 mRNA downstream 438 19530120 ~ 19569097 (-) False LOC120566455
XM_039812927.1 mRNA downstream 438 19530120 ~ 19569097 (-) False LOC120566455
XM_039812928.1 mRNA downstream 3658 19528422 ~ 19565877 (-) True LOC120566455
XM_039812929.1 mRNA downstream 3658 19530120 ~ 19565877 (-) False LOC120566455
XM_039812930.1 mRNA downstream 13823 19528422 ~ 19555712 (-) False LOC120566455
XM_039812994.1 mRNA upstream 20515 19598361 ~ 19698769 (-) True spock1
XM_039812996.1 mRNA upstream 20515 19598361 ~ 19698767 (-) False spock1
XM_039812995.1 mRNA upstream 20515 19598361 ~ 19698766 (-) False spock1
XM_039812993.1 mRNA upstream 20515 19598361 ~ 19698766 (-) False spock1
XM_039813054.1 mRNA upstream 145656 19723502 ~ 19727291 (-) True LOC120566528
TU142773 other downstream 86977 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 350391 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 878125 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1263840 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1577664 17987258 ~ 17991871 (-) False sfxn1
TU142874 other upstream 394569 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 653062 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1549992 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2212407 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 2541839 22119685 ~ 22120067 (-) True G107015

Expression Profile