RNA id: XM_039814405.1


Basic Information

Item Value
RNA id XM_039814405.1
length 1673
RNA type mRNA
GC content 0.49
exon number 12
gene id pmt
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22650018 ~ 22660250 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCTGTTATTTAAAGAGCACCATACACGCTGAAACCTGCACTCTGTCAGAGAGGCGTTACTCATAGTAGCCCTCTTTTGTTAATTGCCAGACTACATTGGAAGTGTAGAATAATTTTGCAATAAGTTCAAATCCACCAAAGACCACCATGGAAAAAGCTCGTAGCAACATGACAGAGTTTTGGAAAGAGCACTCCAAGGCCGCCACAGTGGAGGAGATGATGCTGGACTCTCGTGCCAGGGAGCTGACCCAACATGAGCTGCCCGAGATCCTGTCCGTACTGCCCAGCCTGGCTGGATCCAGAGTGCTGGAACTGGGAGCTGGCATCGGTCGTTTCACCAGCCACCTGCTGACCAAGGCTGGCCATGTGACTGCTGTGGACTTCATGGAAAGCTTTGTGGAGAGGAACAGGCAGGACAATGGTCACCATAGCAACGCTACCTTCATCCAAGCTGACGTAACAAAGCTGGATATCCCCCAAAACAGCATTGATTTTGTCTTTTCCAACTGGCTGCTGATGTACCTGAGCGACACAGAGCTAAAGTCGTTTATAGAGAAGACACTGAGCTGGCTGCGGCCCGGTGGCTTCTTTTTCTTCAGAGAGTCCTGCAACCACCGGTCAGGTGACTCCAAGAGGGACTTTAACCCCACTTGCTACCGCACTGAGGCACAATACAGCCACCTGGTATCATCACTACAAGTGGAGGTGCCAGAGGGGGGCCAAAAGTTTGGTTTCGACATTGTGTTGAAAAAGAAAGTTCAGGCCTATGTTGAGATGAAaaataatcagaatcagatcTGCTGGCTTCTGGAGAAGGTTCCCCGCTCCTCGAGTACCCAGAACGGATTCAACACCTTTCAGCAGTTCCTGGACAACCAGCAGTACACCAACCGCGGCATCCTGCGCTACGAGAAGATGTTCGGGGCTGGTTATGTCAGCACAGGGGGGCCCAGCACCACCAAGGAGTTTGTGGACCTGTTGAACCTGAAGCCCGGACAGAAGGTTCTAGATGTTGGCTGTGGCATTGGTGGAGGGGACTTTTACATGGCAAAGACCTTTGGAGTGGAGGTGCTTGGCCTGGATTTGTCAAACAACATGGTGGACATCGCCATGGAGAGGGCGATCACTGAGAAGCTGCCATCAGTACAGTTTGAGGTGGCTGATGCCACGAAGAGGTCGTTCCCAGAAGGTTCCTTTGATGTGATCTACAGCAGAGACACAATCCTGCACATAGATGACAAACTGGCCCTCTTCAAACGCCTCCATTCATGGTTAAAGCCAGGTGGAAAGTTGCTCATCAGTGATTACTGCTGCGGGGAGAAGCCCTGGACACCGGTGTTTGAGGCCTACGTCAAACAGAGAGGCTATGTCCTCTATACACCCTTACAGTATGGCAAGTTCCTCCAGGAAGCTGGTTTCTGCAATGTTTGCTCAGAAGACCGGACAGCCCAGTTTATCCAGGTGATAAAGACAGAACTGCAGAGAGCTGAAGTCATCAAGGATGAATTCATTCAGGAATTCTCTGAAGAGGACTATTTTGCAATAGTAAATGGATGGAGTGAAAAACTGGAACGTTCCAACAGTGGAGACCAACGATGGGGACTCTTTTATGCGACAAGGGATTGAGTGATTGCACTAAGAATTGAgaagacaataaaataaaaagaaaaaa

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K05929 E2.1.1.103, NMT; phosphoethanolamine N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143870 lncRNA upstream 19008 22631079 ~ 22631370 (+) True G107073
TU143843 lncRNA upstream 235043 22415002 ~ 22415335 (+) True G107050
XR_005640407.1 lncRNA upstream 253327 22390353 ~ 22397051 (+) True LOC120566464
TU143814 lncRNA upstream 272038 22331012 ~ 22378340 (+) True G107025
XR_005640528.1 lncRNA downstream 62775 22723025 ~ 22725653 (+) True LOC120567160
TU143967 lncRNA downstream 163351 22823601 ~ 22823862 (+) True G107149
TU143988 lncRNA downstream 196405 22856655 ~ 22856868 (+) True G107161
TU143991 lncRNA downstream 205718 22865968 ~ 22866201 (+) True G107164
TU143993 lncRNA downstream 206829 22867079 ~ 22874836 (+) False LOC120566955
XM_039813358.1 mRNA upstream 47107 22435278 ~ 22603271 (+) True mid2
XM_039813357.1 mRNA upstream 47107 22488618 ~ 22603271 (+) False mid2
XM_039813359.1 mRNA upstream 47107 22488618 ~ 22603271 (+) False mid2
XM_039814209.1 mRNA upstream 850383 21771722 ~ 21799995 (+) True klhl4
XM_039813063.1 mRNA downstream 4640 22664890 ~ 22684172 (+) True zgc:152774
XM_039813163.1 mRNA downstream 25036 22685286 ~ 22705021 (+) True f8
XM_039814015.1 mRNA downstream 83357 22743607 ~ 22753993 (+) False LOC120567158
XM_039814017.1 mRNA downstream 91446 22751696 ~ 22753993 (+) False LOC120567158
XM_039814016.1 mRNA downstream 91452 22751702 ~ 22753993 (+) True LOC120567158
XR_005640584.1 other upstream 1188928 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2298211 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2589040 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3044605 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 4756848 17890967 ~ 17893530 (+) False gabra6a
TU143990 other downstream 201940 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 294722 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 598021 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 608541 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 794317 23454567 ~ 23466184 (+) False ubl3b

Expression Profile