RNA id: XM_039814432.1


Basic Information

Item Value
RNA id XM_039814432.1
length 1791
RNA type mRNA
GC content 0.48
exon number 8
gene id sash3
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24983493 ~ 24993304 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGCACTTTGTTCGGCTGCAGCAGAGTGCAGCTCTACCTTTTTTTATCTCACAACTTTGGCAGTGACAGCAGCACGGTGACAGAAACCCTCACTGATTAAGACCGGTGTATCGCTCCCACAGCTTTTTGTCCACGGAGATCTCTGAAGGACCACTGAAGAAGAAAATGTTGAGGCGAAGGCCTTCCAATGCCTCGGAGAAGGAGCAGGTGCAGAAGAAGAAGCTGACTCTACAGAGGTCCAGCAGCTTCAAGGATTTTATGAAGCACAAACCCACTTCTCCTGTTGTGTCAGAGAAGGAGTTTAACTTGGAGGAGAATGTGGCAGAGGGTGTAACAGCAGAGGAAGAAGTGAAAAGTGGCAGCAAACTGGGAAAGAAATGGCGCAATGTCATCTCACGTACCATGACCCGCAAAACATCCAAGATGGTGCAGAAGGCTCTGGCTGAAGAGGGGGCTGAGAGTGGTGAGGAGCTGTCTCCGGTCTCTTCTGATTGGCGTCCAGATCTGTGTGCAGGACAGAGGACGTCTGTGTGCTCCACAGGGTCAGAGGACACGCCGCCCAGCCTCATCAGCCGCCAGCTCTCAGGCAGTAGCGACAGACAGAGCCTGGACAGTGGATACTGCCAGAGGGACAGCATGAGGCTGGAGGAGAACGGCGTCTCTTACAACGGACCTTTCTGTGGCCGAGCTCTGGTCCACACTGACTTCACTCCCAGCCCCTATGACGTGGAGTCGCTCAAACTCCAAAAAGGAGACATCATCTACATAATTGAGAAGCCTCCTGTGGGGACCTGGACAGGAAAGCTCAATAACAAAATGGGCTCCTTTAAGTTCATCTACGTCAACCTGCTGCCCGATGAGAGCCCCCCAGCCAGAAGGAGACACTGCAACAGCAAGAACCGCCAATCCAAATCCAAACCCAAAACCCTGGAGGAGGTTCTGGACAGCATTGGTCTTACTGAGCTGAGTTCTTTGCTGTCCATGCACGGTTTTCAGAGCCTGGAGGACTTTGCAGGACTGAAGGAGTCTCACCTCAACGAGCTAAACATCACAGACCCAGACAAGCGCTCCAAAATCCTGAATGCGTCTGAACTGCTGAGAGACTCTGAAGATGAGTCAGAGCCAGAAGAGGAGGTCAAGGAGCCAAGGGACTCTGGTTGTTTTGAGAGCTCAGAGAACCTGGAGAGCGGACGTGAGGAGCCAAAGACGGACGAGAAACTCCAGGATGAAGAAGAGAAGCAAACAGAGGAGCTGGACGCTCTGCAGGAGCAGCTGCAGGATCTGACGGTGGACGAAGGATCTTGAGAAGTGATggaaaaacacttattttatTCCTGGTTCTCAGGGACTCTTATAAGAGAGCGGATTGGTGATAGGGACAATGTAATGTTCAACTACTGTATGAACATGATGGTCTCCGTTTCCCACAGTTTGCGTGTGCTATTGAGCAAGCAGCCCAGTTTCTTTCAGTCTGCTGAGTACGCTGTTTAAATGCCCGTCATATTGTTGATTCCTCCTGAGGATATCATGTAAGGTACCACTGAAGCATTTAAAGGTGTTCTTTCTCTTCATTATGAtcctgttttaaatgttttcatgttGTGCAGTCTCATACAAAtatgaatgtaaaatattttcaATATATTCTTCATGTAACTTGAATTTAATTGTAACTTTCAGTAGTTTGCTTTGTTTACTTGTGTATTTTTCAATGATTTATGTTACACATTAAGCGGAGGTTGTTAACAGTTGGTGTAAATAAAACTGGAATAAAACATAATTCACTGAGA

Function

GO: NA

KEGG:

id description
K23706 SASH3; SAM and SH3 domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144988 lncRNA downstream 2696 24977124 ~ 24980797 (-) True G107903
TU144967 lncRNA downstream 92777 24890301 ~ 24890716 (-) True G107890
TU144966 lncRNA downstream 98066 24885009 ~ 24885427 (-) True G107889
TU144965 lncRNA downstream 99237 24884000 ~ 24884256 (-) True G107888
TU144964 lncRNA downstream 99736 24883130 ~ 24883757 (-) True G107887
TU144993 lncRNA upstream 79877 25073181 ~ 25073832 (-) True G107907
TU145020 lncRNA upstream 187634 25180938 ~ 25186478 (-) True G107923
TU145024 lncRNA upstream 187634 25180938 ~ 25186478 (-) False G107923
TU145077 lncRNA upstream 269875 25263179 ~ 25264862 (-) False ndufa1
TU145122 lncRNA upstream 298313 25291617 ~ 25297266 (-) True G107992
XM_039813956.1 mRNA downstream 35307 24943448 ~ 24948186 (-) False trmt12
XM_039813953.1 mRNA downstream 36065 24943448 ~ 24947428 (-) False trmt12
XM_039813955.1 mRNA downstream 36066 24943448 ~ 24947427 (-) False trmt12
XM_039813954.1 mRNA downstream 36066 24943448 ~ 24947427 (-) False trmt12
XM_039813952.1 mRNA downstream 36066 24943448 ~ 24947427 (-) True trmt12
XM_039812669.1 mRNA upstream 7451 25000755 ~ 25013890 (-) True xpnpep2
XM_039813392.1 mRNA upstream 136842 25130146 ~ 25147858 (-) True vimr2
XM_039813389.1 mRNA upstream 154642 25147946 ~ 25165755 (-) False ocrl
XM_039813387.1 mRNA upstream 154642 25147946 ~ 25165755 (-) True ocrl
XM_039813390.1 mRNA upstream 154642 25147946 ~ 25165315 (-) False ocrl
unassigned_transcript_475 other downstream 121309 24862112 ~ 24862184 (-) False trnav-uac_15
TU144931 other downstream 404394 24573441 ~ 24579099 (-) True G107864
XR_005640439.1 other downstream 1091192 23886824 ~ 23892301 (-) False rab41
unassigned_transcript_474 other downstream 1609485 23373936 ~ 23374008 (-) True trnaf-gaa_66
TU144162 other downstream 1796482 23184272 ~ 23187011 (-) False rnaseh2c
TU145115 other upstream 286299 25279603 ~ 25282199 (-) False G107989
TU145117 other upstream 286299 25279603 ~ 25288086 (-) True G107989
TU145230 other upstream 1464691 26457995 ~ 26460707 (-) False rpl36a
TU145357 other upstream 1995960 26989264 ~ 27001011 (-) True G108181
TU145368 other upstream 2072114 27065418 ~ 27065947 (-) True G108191

Expression Profile