RNA id: XR_005640584.1


Basic Information

Item Value
RNA id XR_005640584.1
length 1396
RNA type transcript
GC content 0.43
exon number 10
gene id stx3a
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21448800 ~ 21468827 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGCCAGAAAAGTGCGTTTTAGAATGATTACACGGAGAGACAGATTATACAGCTCTACACAACTGTTGTTTTAATCCCCTGGGCGAGGAGATTTagcaaagaaaaaacactgGCTTTAAACCCAGCAGCCATATTGTATGGAAAAACGACGGAAAGACTCCTCTTTTCAGAAAGGTCGTGTTCTCAGACACATCTCTGTCAAGACTTTTCGGGActttaattgttttttcttACTGGCGGCGGTGGGTTTCTTTCGGACATCTAGTTTGCCAGCTGGTTGAGGAATTCCGAGATTGGGACTagtttttgaaccatttaaaACAATATTGTGCTAATCTATTTGGTTTAAAGGTGTTAAATTAACTGTGTAAAACATGAAGGACCGATTGGAGCAACTTAAAGCGACATGTGATCAAGATGATGACGAGGTGGAGATTGCTATGGACAACGCAGCCTTCATGGACGAATTCTTCTGTCAGatTGAGGACATCAGGAGCAGTATTGATAAAATTGATGAGAACGTGGCGGAAGTCAAAAAGCTTTTCTCGGTCATCCTGTCTGCTCCCACATCAGATCAGAAAACACAGGATGATTTGGAGGCAATCACCAATGACATAAAGAAGATGGCCAACAATGCAAGAAACAAACTCAAGaCCATTGAGAGGAATCTGGAggcagaggagcaggagagggtGTCGGCTGACATGCGAATACGTAAATCACAGCATGCAGTGCTGTCCAGGAAGTTTGTGGAGGTAATGACAAAGTATAATGAAGCCCAGGTGGACTTCAGGGAGAGGAGTAAAGGACGTATTCAGAGACAACTAGAGATCACTGGAAAAGCAACAACAGATGAGGAACTGGAGGAGATGTTGGAGAGTGGCAATGCTGCTGTGTTTACTGCAgggATTGTGGATGCTGGGGTCTCTAAACAAGCCCTGAGTGAGATTGAAGCCAGACACAAAGACATTGTCCGTCTGGAAAGTAGCATCAAGGAGCTGCATGATATGTTTGTAGACATTGCAATGCTGGTGGAGAGCCAGCTCCATGCCTTCCTTACTCCTCTCTTTACTCTCTTCTGCCACTGCCACCTCCATCTCATCACCCAATtgtaaaatgtacaaataaagcATCATTATAGACATGAGAGCAGACTTCACACTAGAATGTATACAAACACATATTGTTGATTAGtcagtcactgtgtgtgtatgcttacATAAGTCTAACCACATATTTCTTACTGCTTAAACCATGCTTTCTGAGGGAAAGGCTTGTTTGAGgGTGACATAGTTGACAACATAGAGCAGAATGTATCCAAGTCAGTGGACCACATAACAGTGGCTAAGGAACAGACCAAAAAAGCTGTAAggcatcagaccaaagcacgcAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143509 lncRNA upstream 1708 21446882 ~ 21447096 (+) True G106851
TU143396 lncRNA upstream 97826 21298584 ~ 21350978 (+) False zdhhc5b
TU143393 lncRNA upstream 146111 21298584 ~ 21302693 (+) False zdhhc5b
TU143391 lncRNA upstream 146759 21298584 ~ 21302045 (+) False zdhhc5b
TU143384 lncRNA upstream 165592 21279714 ~ 21283212 (+) False selenoh
TU143754 lncRNA downstream 299548 21760998 ~ 21761444 (+) True G106972
TU143757 lncRNA downstream 301917 21763367 ~ 21763641 (+) True G106975
TU143779 lncRNA downstream 382212 21843662 ~ 21843950 (+) True G106992
TU143814 lncRNA downstream 869562 22331012 ~ 22378340 (+) True G107025
TU143816 lncRNA downstream 869562 22331012 ~ 22378340 (+) False G107025
XM_039814387.1 mRNA upstream 2078 21443557 ~ 21446726 (+) True ran
XM_039814388.1 mRNA upstream 2078 21443887 ~ 21446726 (+) False ran
XM_039813295.1 mRNA upstream 5916 21438251 ~ 21442888 (+) True ndufs8b
XM_039813292.1 mRNA upstream 19302 21423052 ~ 21429502 (+) True rad9a
XM_039813294.1 mRNA upstream 19302 21423052 ~ 21429502 (+) False rad9a
XM_039814464.1 mRNA downstream 7633 21469083 ~ 21485421 (+) False kdm2ab
XM_039814465.1 mRNA downstream 8441 21469891 ~ 21485421 (+) False kdm2ab
XM_039814466.1 mRNA downstream 8666 21470116 ~ 21485421 (+) True kdm2ab
XM_039814467.1 mRNA downstream 24183 21485633 ~ 21494051 (+) True ankrd13d
XM_039813311.1 mRNA downstream 49957 21511407 ~ 21517692 (+) True LOC120566710
TU143018 other upstream 1096637 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 1387466 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 1843031 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 3555274 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 3763105 17682919 ~ 17685699 (+) True G105677
TU143990 other downstream 1400740 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 1493522 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 1796821 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 1807341 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 1993117 23454567 ~ 23466184 (+) False ubl3b

Expression Profile