RNA id: XM_039814481.1


Basic Information

Item Value
RNA id XM_039814481.1
length 2290
RNA type mRNA
GC content 0.45
exon number 9
gene id glra4a
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 26357802 ~ 26418964 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAACACACTGACTGACCAGTGCTGTCCAGCCGTCTGAAGCAGTGAGCCTGCTGTGTGCAGCCCTCTGGACTTGGTGGGAGGGGGAGAAGTTTCCCCAAAGACAAGCTTGGATCACTGAGAGAGACGATGCCTTCCTCCTTCAGCCCAGTCTCACAAGCTACTCTGTGGATTTGCTGATTTCCGAAATTAATTTTTCTGCCAGTTATTCAACGGGACTGAGGAGAGATTTTAAAGCAGAGGATGCTCCCACAGGTCATTCGGATTCTGTATGTCTTGTCTTTCTGCTTTTTCCAAGGAGGCTTTATCAGACTGAGCTCCTGTAAGGAGGAGATAAAGCCCCCCGGCAGGGCAGGACCAGCGCTGTCGCCCTCAGACTTCCTGGACAAGCTCATGGGGAAAACATCAGGATATGATGCCCGCATCAGACCCAACTTCAAAGgCCCAGCTGTGAATGTCACCTGTAATATTTTCATCAACAGCTTTGGGTCCATCACAGAAACTACAATGGACTACAGGCTCAATGTATTTCTACGGCAAAATTGGAATGACCCCCGCCTGGCGTACAGCGAATACCCAGACGACTCCCTTGATCTGGATCCATCCATGTTGGACTCTATCTGGAAACCTGATTTATTCTTTGCAAACGAGAAAGGAGCCAATTTCCACGAGGTCACTACTGATAACAAGCTACTACGGATTTTCCAAGATGGCAGCGTTCTATACAGCATTAGGCTGACTCTTGTCCTGTCCTGCCCTATGGACTTGAAGAATTTTCCAATGGACATTCAGACCTGTACGATGCAGCTTGAAAGCTTTGGTTACACCATGAATGACTTGATCTTTGAGTGGCTGTCTGAAAACCCCGTTCAGGTGGCTGATGATCTCACTCTCCCCCAGTTTGTGCTAAAAGAGGAGAAGGATTTGGGCTACTGCACTAAGTATTACAACACAGGTAAATTCACCTGCATTGAAGTGAAGTTCCATCTGGAACGTCAAATGGGCTACTACTTGATCCAGATGTACATCCCCTCCCTCCTCATAGTCATCCTTTCCTGGGTGTCTTTCTGGATAAACATGGACGCTGCACCAGccagagtgggtctgggcatcACCACTGTACTGACGATGACCACGCAGAGCTCTGGTTCAAGGGCCTCTCTGCCCAAGGTGTCCTATGTGAAGGCCATTGATATTTGGATGGCAGTGTgccttttgtttgtgtttgctgCCCTGCTGGAGTATGCAGCAGTTAACTTTGTCTCAAGGCAACACAAGGAGTTCATCAGGCTGAGGAAAAAGCAGCGGCAGCAAAGAATAGAAGAGGAACTTGTGAGGGAGAGCCGTGGCTTTTACTTCCGGGGTTATGGACTGGGTCACTGCCTGCAGACCAAGGATGGTACCGCTGTGGAGGGAGCCACTGTGTTCACCACCCCGCCacctccgcctcctcctcctcctccagttaCCTTTTACGACGGAGGGGTACTCCACAAGCGTTTTGTGGATCGGGCAAAGCGCATTGACACCATATCCAGAGCAGTCTTTCCCTTGAGCTTCCTCATATTCAATATCTTCTACTGGATCACATATAAAGTGTTGCGACACGAGGACATCCATCAAAATTTGTAGAACGCTCTCTGCCGACCCAAGTTGCtacattttaagttttttttcttcagaaccGAAACTGCCTGTCAGATCTACAGTACATTACAATGAGGAAATGTGTCAAGAGGCTTATCTGCTTCTTAAAACCATTGCTAAAAAACTGTGTGCTCAGGTGCGTCTTCAGGATCTCAGACGAAGAGCTGAAAGACAAGGTTAAGCTGTGTGCATTCAGGCTAGTGTTGTTTGTAATTTGCCAACTCGTTTCGGTCTTGGTTTGATTCGTCTGGATTACAACAGAGACAAAACACCGCTGGTACTTGTGGGTTCATGACCTTTGTTTGAAATGATTAGAGTTAAGAGAATACAATGTTGATCCTGCCTGGATAACACATACCGACTTGAATTTTGACACTACGCATCTTTGAATGAATGTTTTTGAAAATTCTAAAGATTTAAGGTTTTTTTACACCTTTAGATTATCTAATGGGTACGAATGGGTGCGGGGTAAGGAATGGGTCTTTGATATTTATTCAATAAATGATGATAATTCAAttaagattatatatatatatatatatataaaacagtgTATAGAGTGTATATTAAAGAAGCTGTTCATTAAACTGCACAAAGCACAAATATGTATTTCATTTTGtctaaatttaaataaattgttATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145215 lncRNA upstream 84014 26273588 ~ 26273788 (+) True G108062
TU145184 lncRNA upstream 518447 25837363 ~ 25839355 (+) True G108043
TU145180 lncRNA upstream 583014 25774521 ~ 25774788 (+) True G108039
TU145178 lncRNA upstream 664387 25693107 ~ 25693415 (+) True G108037
XR_005640378.1 lncRNA upstream 705140 25650715 ~ 25652662 (+) True LOC120566339
TU145219 lncRNA downstream 40076 26459040 ~ 26460626 (+) True G108066
TU145220 lncRNA downstream 40076 26459040 ~ 26460626 (+) False G108066
TU145247 lncRNA downstream 57858 26476822 ~ 26479297 (+) True timm8a
TU145253 lncRNA downstream 73408 26492372 ~ 26492997 (+) True G108094
TU145339 lncRNA downstream 520963 26939927 ~ 26940175 (+) True G108163
XM_039813527.1 mRNA upstream 709601 25594313 ~ 25648201 (+) False pcdh19
XM_039813373.1 mRNA downstream 32820 26451784 ~ 26457912 (+) True gla
XM_039813380.1 mRNA downstream 42324 26461288 ~ 26476570 (+) True btk
XM_039813378.1 mRNA downstream 57832 26476796 ~ 26478860 (+) False timm8a
XM_039813372.1 mRNA downstream 64731 26483695 ~ 26486831 (+) True mars2
XM_039813405.1 mRNA downstream 425723 26844687 ~ 27069215 (+) True LOC120566768
unassigned_transcript_476 other upstream 1036506 25321225 ~ 25321296 (+) True trnae-uuc_61
XR_005640445.1 other upstream 1049876 25291607 ~ 25307926 (+) False sept6
XR_005640591.1 other upstream 1076722 25280948 ~ 25281080 (+) True LOC120567498
TU144873 other upstream 1260800 25073213 ~ 25097002 (+) False apln
TU145245 other downstream 42356 26461320 ~ 26467814 (+) False btk
TU145248 other downstream 57858 26476822 ~ 26479149 (+) False timm8a
XR_005640585.1 other downstream 721372 27140336 ~ 27140454 (+) True LOC120567492
TU145443 other downstream 971446 27390410 ~ 27393621 (+) True grxcr1a
XR_005640495.1 other downstream 3809009 30227973 ~ 30279852 (+) False gria2b

Expression Profile