RNA id: XR_005640452.1



Basic Information


Item Value
RNA id XR_005640452.1
length 749
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC120566722
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19262030 ~ 19262872 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCCGTCCCCTACTAGGAGTCAGGGACCTCAGGActggaggagcagagggagTTTATGGCGGGCTGCAAAATACACCAGAGAAGGCCCTCAGGACGAGCCAGTACGGCAGGCTGATGGTGCAGACTGCGTTCGAGGCTCAACTCCACCTGTCGAAAAAGATTTCGGAGAGGGCGAGAAGGGCACCGTATTGGGTGCAGCCCAGCATCCCTAGACACACAGACTctcttgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtaaatagttgttttattgtgtttcatAGATTGGTTCAGATTAATTTAGTATgttcttttttattactttaagattccttttttattagattttcttttttagtaGATGTTAAGATTCATTtacttttagtgtgttttcaaatgttgttCAATATTGGTATGTGTTTAATACAAGTTCCTTTTTACTTAATGTCAACTATAATACTGAGCACGCTTAGCCTAAACATGAAGCTAGGAACACCAAATTGGTCAGGTATTCTCAACACAGGCCCACCTTTGAGTTTGAAAAGGTTCAAGGCaatttgtagcttgaaacaagctccAAAGTAACAGAGTTAAAAAGACAAACAGCCAGAGAACTTGAGACAGAAACCAGCCAGGACCAGTCTTAACTGTTAAATGTATAAGGAGCACATATGCAAATAAAAAGCATTACAAAATTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142574 lncRNA downstream 46112 19214800 ~ 19215918 (-) True G106164
TU142520 lncRNA downstream 128017 19132620 ~ 19134013 (-) True G106128
TU142523 lncRNA downstream 131039 19129286 ~ 19130991 (-) False G106128
TU142463 lncRNA downstream 189288 19072063 ~ 19072742 (-) True G106085
TU142462 lncRNA downstream 190847 19070848 ~ 19071183 (-) True G106084
XR_005640450.1 lncRNA upstream 41 19262913 ~ 19265476 (-) True LOC120566720
XR_005640451.1 lncRNA upstream 24204 19287076 ~ 19288469 (-) True LOC120566721
TU142694 lncRNA upstream 49937 19312809 ~ 19314416 (-) True G106243
TU142699 lncRNA upstream 57391 19320263 ~ 19321306 (-) True G106248
TU142713 lncRNA upstream 77622 19340494 ~ 19400495 (-) False G106259
XM_039813325.1 mRNA downstream 11594 19219074 ~ 19250436 (-) False LOC120566717
XM_039813326.1 mRNA downstream 11594 19219074 ~ 19250436 (-) True LOC120566717
XM_039813328.1 mRNA downstream 11594 19219074 ~ 19250436 (-) False LOC120566717
XM_039813327.1 mRNA downstream 34370 19219074 ~ 19227660 (-) False LOC120566717
XM_039813329.1 mRNA downstream 39732 19219074 ~ 19222298 (-) False LOC120566717
XM_039813322.1 mRNA upstream 14259 19277131 ~ 19282674 (-) True LOC120566716
XM_039813324.1 mRNA upstream 14259 19277131 ~ 19282673 (-) False LOC120566716
XM_039813323.1 mRNA upstream 17064 19279936 ~ 19282674 (-) False LOC120566716
XM_039812734.1 mRNA upstream 38933 19301805 ~ 19305065 (-) True arsia
XM_039812548.1 mRNA upstream 68834 19331706 ~ 19334698 (-) True aldob
TU142573 other downstream 42886 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 570620 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 956335 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1270159 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1466807 17783560 ~ 17795223 (-) False LOC120567448
TU142773 other upstream 217146 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 709543 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 968036 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1864966 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2527381 21790253 ~ 21790725 (-) True G106988

Expression Profile