RNA id: XR_005640501.1


Basic Information

Item Value
RNA id XR_005640501.1
length 2067
lncRNA type intronic
GC content 0.41
exon number 3
gene id LOC120566995
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 27968064 ~ 27970362 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAATGATGACTGTTGTTTATTTACTGCTGATACTCAAAGTGGGGCgaTGCACAGATGATCAGATCTTTGAGAACAGGACTGTTGGTGTGGGAGGCGATGTGAGACTGACTTGTCCTCGCAAGTCTACAGGAAGCTTGTTTTGGATAAGGCTCGTTTCTGGAGAATTTCCTAAAGTCTTAGGAAAAACATTTAGCTTTGAGAGTGATCCTCGCATTACCGCCACAGAGGAGCCCGGGACATTTGTTCTGCATATTGCAAAAGCAAGGCTAAGTGATACTGCAGTTTACTACTGTATGAGAATACATCAACACAActtcacatttttaaaaggagCATGCAATGCATTCTTTAATTTCATTACAGAGTTATTCTTAAAAAGTATGGTGACAGTTGTCTTTTGTTTGAAAATCAATGTTGAagttttatactttattaaattTCCCAAGACAAGAACCTTATCCCACTGCTGTCCCTCCATCTGATCCAGTTGGTCCAGGAGACTCAGTGACTCTGCAGTGTTCATTCCTTTCTGACTCTGAGAACTTgtccagaaaaacaaagtgtgttCTGTTTCAGAGCTGGATCACATCAATGTGACTCAGATTTTAATTATACTCAAGAATCCAGAGGGACTCTTGACAAAGAAATGTATCTACAGCTTCTTTAAGAACGTCAGCTCCTCTGATGGCGGGACTTATCACTGTGCTGTGGTCACATGTGGGGAGATATATTCTGGAAACGGATCAGAACTCGAAACTGAAGGTAACCGCattgtatttaaatgtaataagataatgagaatgtgtgtgttcaATTAAGGTCAAGTACCACAACATTAAATATGTATGAATTACTCTTAATTACACTTTCACTAATTGTTAACTTTTCATATTGTGTCAGCAGTCAACATGCAGGACTCTCAGAAGGACCATACTGTTCTGTTAGGTGCTGCTTTGGCTATAAGTCTGATTGTTATAGCCTTTCTCATTTATTCAATCAAGAAGCTTGTTACGTccccatttcaatcaggagagacttccttgcaaATATGAACATGTTTATTGTACAGGACAAAATATCGAAAATGAAATGTGCAAAGTctctggagattagactccatcaaatccatgttataaaaggggtagtgaacccaaacatatcccccgatggagtccagacactggtggtggtgatgaaggcGCCCAGGACCCAATCAAGATTGCCATTCAGCTGACGATCCCCGGAGGACTCTGTTCCTGAAACGACAGTTGACAactgcagaggagagagaagatttaaaacaggatgttatgctgtgattggcttgtgaTACATGGctgaatctgattggtttagCTAACAATGAAACAGCCGAAACCAATGGAGGCCATGGAACAGCTGATCAATTAGGAGTGATGAAAAAAGAGATTTGAAGTCTTCCTGTAAGaacttacgctgagcttcatttgtgGTGTCCAGGGGAAAAGGGGAGCAACAATAAATAATAAGCTGGGTGttcaaagaaagaaaggaaacagAACGATTCGTACCATTAAACTATTTATTTAGACATAAATGAGCCCACTattaacacaaaacaaccaccCTAAAAGAATGGAGGTGAAAGACCATTCAAACTAAACAAGCCACTAATCCAACCAATAACACAATCCCTCCACTGAGGGAGTAATGACAAGACGAAGAGCACCACACAGCTCTGGTTCACGACCAGCGATACAACTCTGCTCGGCTATCAGGCCCACTGGCATTaatgctgtgtttttattttataatacagCTGCTGTTGCACTGCAAACAAATGCTGCAACAGCCAGTGGTCATCAGCAAAGTCAGCAGGCAGATGAGGACTTGGTTTATTCTGCACCAATCTTTACCAGTAGGAAAGCTAGCAAATGAGGGACAAGGGATGCAaaacagaggaggaagagtgtCTACTCTGATGTCAGGGCTCTGGGGTTGGAATAACACTCTAAACACTAGATTTGCTACTCATTTTAGTCTGCACATGGTAAAAACATTTGCCTCTAAAGTTGGTAAATAATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145664 lncRNA downstream 13957 27953479 ~ 27954107 (-) False LOC120566991
TU145629 lncRNA downstream 128957 27837568 ~ 27839107 (-) True LOC120567057
XR_005640513.1 lncRNA downstream 129143 27838338 ~ 27838921 (-) False LOC120567057
TU145614 lncRNA downstream 181281 27786110 ~ 27786783 (-) False aurkb
TU145588 lncRNA downstream 195083 27772676 ~ 27772981 (-) True G108353
TU145677 lncRNA upstream 10688 27981050 ~ 27981447 (-) True G108422
TU145679 lncRNA upstream 11596 27981958 ~ 27982329 (-) True G108424
XR_005640500.1 lncRNA upstream 33172 28003534 ~ 28004849 (-) False LOC120566994
XR_005640499.1 lncRNA upstream 33172 28003534 ~ 28004849 (-) True LOC120566994
TU145692 lncRNA upstream 54208 28024570 ~ 28030736 (-) False LOC120566547
XM_039813761.1 mRNA downstream 3194 27962530 ~ 27964870 (-) True LOC120566992
XM_039813759.1 mRNA downstream 12370 27952256 ~ 27955694 (-) True LOC120566991
XM_039813760.1 mRNA downstream 13730 27952256 ~ 27954334 (-) False LOC120566991
XM_039813758.1 mRNA downstream 25718 27940057 ~ 27942346 (-) True LOC120566990
XM_039813756.1 mRNA downstream 31529 27934294 ~ 27936535 (-) True LOC120566988
XM_039813070.1 mRNA upstream 13718 27984080 ~ 27985665 (-) True LOC120566546
XM_039813071.1 mRNA upstream 60341 28030703 ~ 28038700 (-) True LOC120566547
XM_039813074.1 mRNA upstream 79935 28050297 ~ 28057524 (-) True LOC120566551
XM_039813075.1 mRNA upstream 95727 28066089 ~ 28068565 (-) True LOC120566552
XM_039813076.1 mRNA upstream 151004 28121366 ~ 28122549 (-) True LOC120566554
TU145627 other downstream 128957 27837848 ~ 27839107 (-) False LOC120567057
TU145628 other downstream 128957 27837848 ~ 27839107 (-) False LOC120567057
unassigned_transcript_477 other downstream 188850 27779133 ~ 27779214 (-) True trnal-aag_2
TU145467 other downstream 705944 27258247 ~ 27262120 (-) False LOC120567151
TU145368 other downstream 902117 27065418 ~ 27065947 (-) True G108191
TU145691 other upstream 51375 28021737 ~ 28023229 (-) True G108433
TU146164 other upstream 2690550 30660912 ~ 30661623 (-) True G108777
TU146169 other upstream 2699169 30669531 ~ 30670849 (-) True G108781
XR_005640397.1 other upstream 3417345 31387707 ~ 31423481 (-) False LOC120566409
TU146377 other upstream 3460658 31431020 ~ 31485976 (-) True LOC120566557

Expression Profile