RNA id: XR_005640589.1



Basic Information


Item Value
RNA id XR_005640589.1
length 143
RNA type snoRNA
GC content 0.44
exon number 1
gene id LOC120567496
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 2896171 ~ 2896313 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCCTGGGCCATTGTTGTCCTCTCGATCTCTGTAGAGtggacaaaacacaaacatgccAGATTAATAGTGAAAACATTTGGAGTTATCAGGGCCACCAGTCCTTCAAGGTCAGACTGAGTTGGTAGTATAATACTCCGACATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138544 lncRNA downstream 105347 2790526 ~ 2790824 (-) True G102941
TU138526 lncRNA downstream 162286 2730148 ~ 2733885 (-) False slc7a2
TU138518 lncRNA downstream 184732 2709027 ~ 2711439 (-) True G102923
TU138510 lncRNA downstream 201557 2694352 ~ 2694614 (-) True G102916
TU138509 lncRNA downstream 202616 2690831 ~ 2693555 (-) True G102915
TU138701 lncRNA upstream 42833 2939146 ~ 2940797 (-) True G103059
TU138709 lncRNA upstream 64058 2960371 ~ 2961386 (-) True G103067
TU138748 lncRNA upstream 225366 3121679 ~ 3125337 (-) True G103096
TU138749 lncRNA upstream 235838 3132151 ~ 3191381 (-) True G103097
TU138737 lncRNA upstream 271339 3167652 ~ 3246583 (-) False G103085
XM_039813165.1 mRNA downstream 12076 2865839 ~ 2884095 (-) True ints6l
XM_039814456.1 mRNA downstream 37125 2854830 ~ 2859046 (-) True pfdn6
XM_039814051.1 mRNA downstream 51472 2843087 ~ 2844699 (-) True her11
XM_039812820.1 mRNA downstream 79969 2796249 ~ 2816202 (-) True micu3b
XM_039813961.1 mRNA upstream 3038 2899351 ~ 2909040 (-) True hprt1
XM_039814048.1 mRNA upstream 15302 2911615 ~ 2924773 (-) False phf6
XM_039814047.1 mRNA upstream 15302 2911615 ~ 2924773 (-) True phf6
XM_039813925.1 mRNA upstream 259380 3155693 ~ 3157527 (-) True LOC120567109
XM_039813926.1 mRNA upstream 267883 3164196 ~ 3178567 (-) True sting1
XR_005640447.1 other downstream 698254 2181043 ~ 2197917 (-) True sh2d1aa
TU137926 other downstream 2054625 838961 ~ 841546 (-) False insb
TU137703 other downstream 2664727 220592 ~ 231444 (-) True G102276
TU138946 other upstream 1006678 3902991 ~ 3925309 (-) True G103268
TU138957 other upstream 1032741 3929054 ~ 3933202 (-) False smim19
TU139113 other upstream 1424396 4320709 ~ 4399990 (-) False LOC120567378
TU139115 other upstream 1530455 4426768 ~ 4440883 (-) False fmr1
TU139116 other upstream 1530455 4426768 ~ 4439745 (-) False fmr1

Expression Profile