RNA id: XR_005640591.1


Basic Information

Item Value
RNA id XR_005640591.1
length 133
RNA type snoRNA
GC content 0.50
exon number 1
gene id LOC120567498
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25280948 ~ 25281080 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGCAGGTCTGCAATTGCAGCACTCCATTGCAGTAGAGTGCTGTCATTAACCCTGCTGAGAGCATCTTTCTGCAACAGAGCGGACTCCTGCTCACTGTGGTGGTGATGAGGAAGCTCTGTAGCTGAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145085 lncRNA upstream 7317 25271539 ~ 25273631 (+) True G107972
TU145067 lncRNA upstream 28480 25252125 ~ 25252468 (+) True G107958
XR_005640455.1 lncRNA upstream 173326 25106440 ~ 25107622 (+) True LOC120566737
TU144867 lncRNA upstream 333612 24947121 ~ 24947336 (+) True G107821
TU144866 lncRNA upstream 334006 24946738 ~ 24946942 (+) True G107820
TU145103 lncRNA downstream 7039 25288119 ~ 25290199 (+) True G107981
TU145107 lncRNA downstream 99633 25380713 ~ 25394758 (+) True G107985
TU145111 lncRNA downstream 105388 25386468 ~ 25387635 (+) True G107988
TU145158 lncRNA downstream 217536 25498616 ~ 25498866 (+) True G108020
TU145171 lncRNA downstream 367454 25648534 ~ 25648802 (+) True G108030
XM_039813623.1 mRNA upstream 11718 25265515 ~ 25269230 (+) True upf3b
XM_039813624.1 mRNA upstream 18262 25258629 ~ 25262686 (+) True LOC120566922
XM_039813588.1 mRNA upstream 29305 25241567 ~ 25251643 (+) True tmem255a
XM_039813589.1 mRNA upstream 29305 25241567 ~ 25251643 (+) False tmem255a
XM_039813591.1 mRNA upstream 29305 25241567 ~ 25251643 (+) False tmem255a
XM_039813258.1 mRNA downstream 10527 25291607 ~ 25310218 (+) False sept6
XM_039813254.1 mRNA downstream 10527 25291607 ~ 25310218 (+) True sept6
XM_039813256.1 mRNA downstream 10527 25291607 ~ 25310218 (+) False sept6
XM_039813259.1 mRNA downstream 10527 25291607 ~ 25307926 (+) False sept6
XM_039813257.1 mRNA downstream 10527 25291607 ~ 25307926 (+) False sept6
TU144869 other upstream 183946 25073213 ~ 25097002 (+) False apln
TU144871 other upstream 183946 25073213 ~ 25097002 (+) False apln
TU144872 other upstream 183946 25073213 ~ 25097002 (+) True apln
TU144873 other upstream 183946 25073213 ~ 25097002 (+) False apln
TU144875 other upstream 183946 25073213 ~ 25097002 (+) False apln
XR_005640445.1 other downstream 10527 25291607 ~ 25307926 (+) False sept6
unassigned_transcript_476 other downstream 40145 25321225 ~ 25321296 (+) True trnae-uuc_61
TU145245 other downstream 1180240 26461320 ~ 26467814 (+) False btk
TU145248 other downstream 1195742 26476822 ~ 26479149 (+) False timm8a
XR_005640585.1 other downstream 1859256 27140336 ~ 27140454 (+) True LOC120567492

Expression Profile