RNA id: unassigned_transcript_476


Basic Information

Item Value
RNA id unassigned_transcript_476
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnae-uuc_61
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25321225 ~ 25321296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCaggcggcccgggttcgactcccgGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145103 lncRNA upstream 31026 25288119 ~ 25290199 (+) True G107981
TU145084 lncRNA upstream 39018 25279610 ~ 25282207 (+) False rpl39
TU145085 lncRNA upstream 47594 25271539 ~ 25273631 (+) True G107972
TU145067 lncRNA upstream 68757 25252125 ~ 25252468 (+) True G107958
XR_005640455.1 lncRNA upstream 213603 25106440 ~ 25107622 (+) True LOC120566737
TU145107 lncRNA downstream 59417 25380713 ~ 25394758 (+) True G107985
TU145111 lncRNA downstream 65172 25386468 ~ 25387635 (+) True G107988
TU145158 lncRNA downstream 177320 25498616 ~ 25498866 (+) True G108020
TU145171 lncRNA downstream 327238 25648534 ~ 25648802 (+) True G108030
XR_005640378.1 lncRNA downstream 329419 25650715 ~ 25652662 (+) True LOC120566339
XM_039813261.1 mRNA upstream 5794 25311039 ~ 25315431 (+) True nkrf
XM_039813258.1 mRNA upstream 11007 25291607 ~ 25310218 (+) False sept6
XM_039813254.1 mRNA upstream 11007 25291607 ~ 25310218 (+) True sept6
XM_039813256.1 mRNA upstream 11007 25291607 ~ 25310218 (+) False sept6
XM_039813259.1 mRNA upstream 13299 25291607 ~ 25307926 (+) False sept6
XM_039813263.1 mRNA downstream 231 25321527 ~ 25363249 (+) True elf1
XM_039813262.1 mRNA downstream 11378 25332674 ~ 25363249 (+) False elf1
XM_039813266.1 mRNA downstream 11378 25332674 ~ 25363249 (+) False elf1
XM_039813264.1 mRNA downstream 11873 25333169 ~ 25363249 (+) False elf1
XM_039813265.1 mRNA downstream 23292 25344588 ~ 25363249 (+) False elf1
XR_005640445.1 other upstream 13299 25291607 ~ 25307926 (+) False sept6
XR_005640591.1 other upstream 40145 25280948 ~ 25281080 (+) True LOC120567498
TU144871 other upstream 224223 25073213 ~ 25097002 (+) False apln
TU145245 other downstream 1140024 26461320 ~ 26467814 (+) False btk
TU145248 other downstream 1155526 26476822 ~ 26479149 (+) False timm8a
XR_005640585.1 other downstream 1819040 27140336 ~ 27140454 (+) True LOC120567492
TU145443 other downstream 2069114 27390410 ~ 27393621 (+) True grxcr1a
XR_005640495.1 other downstream 4906677 30227973 ~ 30279852 (+) False gria2b