RNA id: TU149102


Basic Information

Item Value
RNA id TU149102
length 784
RNA type TUCP
GC content 0.58
exon number 8
gene id dnajc1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 737805 ~ 756498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCTGGAGAAACAGCTGGACGAGCTGCTGagtaagaagaagaaagagaagaagaagaagctgagCTCCAGACCGCCAGACGAGCTGCGCAGCGCCACGCACGACAGAGCTTACGAGCGGCCACACTGGCAGGACATCCTCCCTCTGAAGCTCAGCATCTGGCTCTACCTGTCCATCAAGAACCTGCCGCACACCGTCCAGgAGCTGAAGCAGTACTACGAAGACTACCAGCTgatgaaacagcagcagagagaagaagCTGAAGCTGAGCAGGAAGTTGTCCCCAGAGAGAAGCGTCCCAAGGTGAAGAAGATGAAGCTGGAGTTCCCGGTGTACGAGCTGCAGACGGAGAGCGTGCCGAGTTACTGCCAGCAGGACACGTCCATCGAGGACATCGAGGACCAGATGGACGACTGGCTGCAGGACCGCAGAGCTGCCCGCAAGAAggcAGCAGACTGGACAGACGAGGAGATCAGCCTCCTCAGCAGGTTGATGGTTAAATTCCCCGGAGGAAGTCCTGGTCGCTGGGAGAAGATTGCTCATGAGCTGGGGCGGTCAGTGAGCGACGTGACCACTAAAGTCAAACAGGTGAAGGACAACGTGAGCCACACCTCAGGTCTGGTGAAGCTGTCAGATCTGAAGGGCCCTCTTCCTCCTGTGAGGTCATTTCCTGTTGCCGACGGCGTGATGACTCAGCGAGAGGGTGGAGCCTGTGAGGAGGAGGCGGAGCAGGAAGCTGCTCAGGCCGTCAGGAAGAGGAACAGGAAGTCGGCGGCGGACGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149058 lncRNA upstream 50977 529196 ~ 694192 (+) True G110769
TU149104 lncRNA upstream 56389 688490 ~ 688780 (+) True G110806
TU149090 lncRNA upstream 103553 641286 ~ 641616 (+) True G110794
TU149080 lncRNA upstream 138780 605618 ~ 606389 (+) True G110788
TU149074 lncRNA upstream 141603 593894 ~ 603566 (+) False G110783
TU149100 lncRNA downstream 102 754531 ~ 756498 (+) False dnajc1
TU149135 lncRNA downstream 11807 766236 ~ 766773 (+) False G110823
TU149136 lncRNA downstream 11807 766236 ~ 766773 (+) True G110823
TU149137 lncRNA downstream 11807 766236 ~ 766773 (+) False G110823
TU149141 lncRNA downstream 23898 778327 ~ 779219 (+) True G110826
XM_039816918.1 mRNA upstream 13945 693088 ~ 731224 (+) True LOC120569073
XM_039814703.1 mRNA upstream 96697 646773 ~ 648472 (+) True LOC120567728
XM_039816040.1 mRNA upstream 380985 363753 ~ 364184 (+) True LOC120568476
XM_039814764.1 mRNA upstream 388130 356058 ~ 357039 (+) True LOC120567754
XM_039816879.1 mRNA upstream 413839 330351 ~ 331330 (+) True LOC120569058
XM_039815675.1 mRNA downstream 2692 757121 ~ 764131 (+) True c11h7orf25
XM_039815033.1 mRNA downstream 162699 917128 ~ 935180 (+) False LOC120567931
XM_039815032.1 mRNA downstream 175639 930068 ~ 935180 (+) True LOC120567931
XM_039815043.1 mRNA downstream 228086 982515 ~ 1002554 (+) True si:dkey-154p10.3
XM_039815040.1 mRNA downstream 238930 993359 ~ 998215 (+) True LOC120567936
TU149103 other upstream 131 737824 ~ 745038 (+) False dnajc1
TU149084 other upstream 129173 612113 ~ 615996 (+) True G110789
TU149056 other upstream 220018 523450 ~ 525151 (+) True G110768
TU148954 other upstream 531567 182864 ~ 213602 (+) False G110704
TU148917 other upstream 571181 158706 ~ 173988 (+) False LOC120568467
TU149506 other downstream 228090 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149501 other downstream 326044 1080473 ~ 1092725 (+) False cdyl
TU149498 other downstream 334168 1088597 ~ 1092725 (+) False cdyl
TU149499 other downstream 334168 1088597 ~ 1092725 (+) False cdyl
TU149593 other downstream 488220 1242649 ~ 1336191 (+) True G111076

Expression Profile