RNA id: TU149103


Basic Information

Item Value
RNA id TU149103
length 470
RNA type TUCP
GC content 0.59
exon number 4
gene id dnajc1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 737805 ~ 756498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGATGTGACCGGCAGTGTTTCCGGTCCTGTGAGGCTGACGGTAGCACTCAGAGCAGAGTTCTTATCGCCGTGGTTAGTGTGTTATTGTGACTGTGTGTCGGTGATATGCGGGTGTGTTTGGGCCCCTGCGGGCCCCCGCGGCTCGGCCTGGCTCCCTGTGGACCCACACTGCTCGGCCTGGCCCTGCTGCTAGCCGCGGTCCCCCCTCTGTGGGCCTGGGACGCGGACCTGGAGCTGCTGGACCTGGTGGAGGAGATCCCGCAGAGCTTCTACCAGTTCATGTCTCTGGACCAGgatGCCTCAGCATTAGAGGTGAAGAAGGCGTATCGCcggctgtctctctctcttcatcctgATAAGAACAGAGATGAAAACGCTGAAACTCAGTTCAGACAGCTGGTGGCGATTTATGAAGTCCTGAAGGACGAGGAGCGCCGACGCAAgtATGATGACATCCTGGAGAATGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149058 lncRNA upstream 43632 529196 ~ 694192 (+) True G110769
TU149104 lncRNA upstream 49044 688490 ~ 688780 (+) True G110806
TU149090 lncRNA upstream 96208 641286 ~ 641616 (+) True G110794
TU149080 lncRNA upstream 131435 605618 ~ 606389 (+) True G110788
TU149074 lncRNA upstream 134258 593894 ~ 603566 (+) False G110783
TU149134 lncRNA downstream 2683 747721 ~ 748675 (+) True G110822
TU149100 lncRNA downstream 9493 754531 ~ 756498 (+) False dnajc1
TU149135 lncRNA downstream 21198 766236 ~ 766773 (+) False G110823
TU149136 lncRNA downstream 21198 766236 ~ 766773 (+) True G110823
TU149137 lncRNA downstream 21198 766236 ~ 766773 (+) False G110823
XM_039816918.1 mRNA upstream 6600 693088 ~ 731224 (+) True LOC120569073
XM_039814703.1 mRNA upstream 89352 646773 ~ 648472 (+) True LOC120567728
XM_039816040.1 mRNA upstream 373640 363753 ~ 364184 (+) True LOC120568476
XM_039814764.1 mRNA upstream 380785 356058 ~ 357039 (+) True LOC120567754
XM_039816879.1 mRNA upstream 406494 330351 ~ 331330 (+) True LOC120569058
XM_039815675.1 mRNA downstream 12083 757121 ~ 764131 (+) True c11h7orf25
XM_039815033.1 mRNA downstream 172090 917128 ~ 935180 (+) False LOC120567931
XM_039815032.1 mRNA downstream 185030 930068 ~ 935180 (+) True LOC120567931
XM_039815043.1 mRNA downstream 237477 982515 ~ 1002554 (+) True si:dkey-154p10.3
XM_039815040.1 mRNA downstream 248321 993359 ~ 998215 (+) True LOC120567936
TU149084 other upstream 121828 612113 ~ 615996 (+) True G110789
TU149056 other upstream 212673 523450 ~ 525151 (+) True G110768
TU148954 other upstream 524222 182864 ~ 213602 (+) False G110704
TU148917 other upstream 563836 158706 ~ 173988 (+) False LOC120568467
TU148952 other upstream 581214 146254 ~ 156610 (+) False LOC120568467
TU149101 other downstream 131 745169 ~ 754429 (+) False dnajc1
TU149102 other downstream 131 745169 ~ 754429 (+) False dnajc1
TU149506 other downstream 237481 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149501 other downstream 335435 1080473 ~ 1092725 (+) False cdyl
TU149498 other downstream 343559 1088597 ~ 1092725 (+) False cdyl

Expression Profile