RNA id: TU149149


Basic Information

Item Value
RNA id TU149149
length 1142
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G110829
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 806746 ~ 808382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGATGAAGAAAAGTCACTTTGTGTTTCTGACGCAGAGGGTTCAGTATCTCTGCTGGCGTTCTGTCTTTGTCCTGCTGAATAGAggataagccccgcccactagtgctataagccccgcccactagtgctataagccccgcccactatTGGTGTAAGTCCTGCcaccagacacacacgcactcaccaaacagacacacacacacacacagacacatacacacacacacacacacacacaccaaacagacacacacacacacagacacaccaaacacacacacagacagacacacacacacagacacacacagatacacagacacagacagacacacacacacacaagtgtatttgtgtaaacagggcctgagATGTCACCTGACCAATGATCTTTGGTTCTGAGACGTCACCTGACCAATGATCTTTGGTTCTGAGACGTCACCTGACCAATGATCTCTGGTTCTGAGACGTCACCTGACCAATGATCTTTGGTTCTGAGATGTCACCTGACCAATGATCTTTGGTTCTGAGACGTCACCTGACCAATGATCTCTGGTTCTGAGACGTCACCTGACCAATGATCTCTGGTTCTGAGACGTCACCTGACCAATGATCTCTGGTTCTGAGACGTCACCTGACCAATGATCTTTGGTTCTGAGATGTCACCTGACCAATGATCTTTGGTTCTGAGACGTCACCTGACCAATGATCTTTGGTTCTGAGACGTCACCTGACCAATGATCTTTGGTTCTGAGACGTCACCTGACCAATGATCTTTGGTTCTGAGACGTCACCTGACCAATGATCTCTGGTTCTGAGACGTCACCTGACCAATGATCTTTGGTTCTGAGACGTCACCTGACCAATGGTCTTTGGTTCTGAGACGTCACCTGATCAATGATCTTTGGTTCTACTAGATTCTGCCCATGTTCTTTCTGGATCAGCACCGAGGACTGTAAAGTAGGGTTTAGGTCTGAATATTTGGTGTTAAAATAGAAGTGAAACCATGAGGAATGTTTACTGttttataaagatgtttctattgTAATTATTACTTTACTAATTTGCATaacttaaaaagaaatgtaataaataaaaggttgttTGATGACAGATCCTCTGATGAAGACCATGCTGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149141 lncRNA upstream 27527 778327 ~ 779219 (+) True G110826
TU149135 lncRNA upstream 39973 766236 ~ 766773 (+) False G110823
TU149136 lncRNA upstream 39973 766236 ~ 766773 (+) True G110823
TU149137 lncRNA upstream 39973 766236 ~ 766773 (+) False G110823
TU149100 lncRNA upstream 50248 754531 ~ 756498 (+) False dnajc1
TU149165 lncRNA downstream 7564 815946 ~ 822488 (+) True G110833
TU149169 lncRNA downstream 20691 829073 ~ 839526 (+) True G110837
TU149473 lncRNA downstream 41680 850062 ~ 881134 (+) True G110989
TU149475 lncRNA downstream 42296 850678 ~ 937293 (+) True G110990
TU149472 lncRNA downstream 42551 850933 ~ 854535 (+) False G110989
XM_039815675.1 mRNA upstream 42615 757121 ~ 764131 (+) True c11h7orf25
XM_039816042.1 mRNA upstream 50250 737805 ~ 756496 (+) True dnajc1
XM_039816918.1 mRNA upstream 75522 693088 ~ 731224 (+) True LOC120569073
XM_039814703.1 mRNA upstream 158274 646773 ~ 648472 (+) True LOC120567728
XM_039816040.1 mRNA upstream 442562 363753 ~ 364184 (+) True LOC120568476
XM_039815033.1 mRNA downstream 108746 917128 ~ 935180 (+) False LOC120567931
XM_039815032.1 mRNA downstream 121686 930068 ~ 935180 (+) True LOC120567931
XM_039815043.1 mRNA downstream 174133 982515 ~ 1002554 (+) True si:dkey-154p10.3
XM_039815040.1 mRNA downstream 184977 993359 ~ 998215 (+) True LOC120567936
XM_039815041.1 mRNA downstream 184978 993360 ~ 998215 (+) False LOC120567936
TU149101 other upstream 52317 745169 ~ 754429 (+) False dnajc1
TU149102 other upstream 52317 745169 ~ 754429 (+) False dnajc1
TU149103 other upstream 61708 737824 ~ 745038 (+) False dnajc1
TU149084 other upstream 190750 612113 ~ 615996 (+) True G110789
TU149056 other upstream 281595 523450 ~ 525151 (+) True G110768
TU149506 other downstream 174137 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149501 other downstream 272091 1080473 ~ 1092725 (+) False cdyl
TU149498 other downstream 280215 1088597 ~ 1092725 (+) False cdyl
TU149499 other downstream 280215 1088597 ~ 1092725 (+) False cdyl
TU149593 other downstream 434267 1242649 ~ 1336191 (+) True G111076

Expression Profile