RNA id: TU149218


Basic Information

Item Value
RNA id TU149218
length 2111
lncRNA type inter_gene
GC content 0.50
exon number 9
gene id LOC120568736
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 92555 ~ 111481 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGGATGCGGATCGGCTAGTGCTGTTAAAGGTTCGCCACCGCCTCTGTAGTCAGTTACTGAGAGGAAGAAGCAGTCCGGGGAGCCAACGGCTCCACAGCCGAGCAAACTGTTCGTTGTTCGGTGAGCTTTGGGGGGGCTGCGGTCCGGTCTGACCACTGAGAAGATAGCTACATGAGAtgagctaacatgctaacgttagctccagGCTCTTCTATGGACTGAGGAGCAGAGTCCCTGTTTCTCAGGGGGGACCAGACCTCTGGCTGGCTGCTGACAGACCACTTTCTACACCGAGTGCTGAAGAGGGCCATGGCTCCCAGCATCTACCCTCCCCACAGGAACTCTTCACTGGGTCCAGCTTCAAAGGGTCTGAGATGGGAGACGGTTCTGGTCCagtctagagaGAGCAGAGTCCCTGTTTCTCAGGGGGGACCAGACCTCTGGCTGCTGACAGACCACTTTCTACACAGAGGGCTGAAGAGGGCCATGGCTCCCAGCGTCTACCCCCCCCACGCTACCTGAACGGGAACTCTTCACTGGGTCCAGCTTCAAAGGGTCTGAGACGGGACACGGTTCTACATGATCCAGCCTAGAGAGAGCAGAGTCCCTGTTTCTCAGGGGGGACCAGACCTCTGGCTGGCTGCTGACAGACCACTTTCTACACCGAGGGCTGAAGAGGACCATGGCTCCCAGCGTCTACCCTCCCCACGCTACCTGAACGGGAACTCTTCACTGGGTCCAGCTTCAAAGGGTCTGAGACGGGACACGGTTCTACATGATCCAGCCTAGAGAAACGGACTCTTCCTCCCGCGCTGTGATGTCAGACCTCCCAACACGACACAGCGGTGAGTGACATCACACCTGTGATGTAACAGCTGCTGGGAGATGATGTGAACAAAAGGCCGAATTGTAGCCCCTTTCTCAGAGCGGGGGCGCCATGACAAAGACGGACCGAAGCGTTCTTCTGATCCCGTGACAGCCCTGCGTTACATGTTTACCCGTTACTCTGAGGCCGTGTAACGGCTGTGTTTGATTGGTCGTCTACGGGCTGCATCACTAACCTCTGTTCTCTGATTGGTTAGGAGCTCTGGAGCGCCGACTGCACACGTTGAGCTACACCGGAGAACCGGGATTAAGCCACGATTTACCACTTATTCTGGCTCAGTTTAGCAAAGGTACCTGAGTTACCATGGAgacttattctgtacagctagcctgctcctgaccaggctaacagctagccaggcaaacagctagcctgctcctgagcaggctaacagctagccaggcaaacagctagcctgctcctgagcAGGTTAACAGCtagccaggctaacagctagcctgctcctgagcaggctaacagctagccaggctaacagctagccaggttaacagctagcctgctcctgaccaggctaacagctagccaggcTAACAGTAACACAATTTTAATTCTCCAAGCTAAATATTTGAATTGTTCTTACTATATAAATACTTTAATTCCCCATGTACCTGTGTACGTACCTCAGTATaagtgtctgtgttgtgtacATTATGTGAGCTGTACGACTTCTCTGGCCCTGCTTCTCTCGTCAGGCTGCCATTGTTAATAAGAACCAGTTAATGACTGGCCTGTAAAGATGCCATTGTTAATAAGAACCAGTTAATGACTGGCCTGTAAAGATGCCATTGTTAATAAGAACCAGTTAATGACTGGCCTGTAAAGATGCCATTGTTAATAAGAACCAGTTAATGACTGGCCTGTAAAGATGAAGCTAACACCAGAATTGATTGGTCCTCATCGCCCAGCTGAGGTTTTACCTTCTTATtatcagcctgcattaaaatactACCGCTGCATCTGATTTTTCAGTTAACTGTTATTTAAATCAACTTAAATAATGCTTCATGTGacattgctgtatgaagactgctgttcatctTGTTAGAAGGTTCAATATATTACAGCAGTTGTTGAAGGCTGATAAAGttgccaaatgtgtttttaaatgaagtcagttAGAGCGATATatgtgtgtttctatagtgGACCAATGCACCTTATTATTTTAGTGGAttaatttttgtatttgtttttaataaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149199 lncRNA downstream 1891 73843 ~ 90664 (-) True G110852
TU149189 lncRNA downstream 39117 46432 ~ 53438 (-) True G110845
TU149188 lncRNA downstream 43113 44777 ~ 49442 (-) True G110844
TU149230 lncRNA upstream 8288 119654 ~ 141676 (-) False G110859
TU149231 lncRNA upstream 8288 119654 ~ 141901 (-) True G110859
TU149235 lncRNA upstream 29899 141265 ~ 145053 (-) False fastk
TU149190 lncRNA upstream 38632 149998 ~ 150962 (-) True G110846
TU149238 lncRNA upstream 39801 151167 ~ 202319 (-) True G110865
XM_039816727.1 mRNA downstream 2613 64577 ~ 89942 (-) True LOC120568960
XM_039816726.1 mRNA downstream 2613 66147 ~ 89942 (-) False LOC120568960
XM_039816953.1 mRNA downstream 29095 52608 ~ 63460 (-) True ttc19
XM_039816316.1 mRNA downstream 46574 274 ~ 45981 (-) True LOC120568662
XM_039816023.1 mRNA upstream 9484 120850 ~ 145048 (-) True fastk
XM_039814765.1 mRNA upstream 124978 236344 ~ 243099 (-) False LOC120567755
XM_039816038.1 mRNA upstream 146709 258075 ~ 302142 (-) True adhfe1
XM_039814761.1 mRNA upstream 197743 309109 ~ 310062 (-) True LOC120567752
XM_039816880.1 mRNA upstream 215060 326426 ~ 327379 (-) True LOC120569059
TU149234 other upstream 21362 132728 ~ 140682 (-) False fastk
TU149261 other upstream 123891 235257 ~ 243086 (-) True LOC120567755
TU149262 other upstream 123891 235257 ~ 243086 (-) False LOC120567755
TU149263 other upstream 123891 235257 ~ 243086 (-) False LOC120567755
TU149279 other upstream 155593 266959 ~ 288340 (-) False adhfe1

Expression Profile