RNA id: TU149263


Basic Information

Item Value
RNA id TU149263
length 2874
RNA type TUCP
GC content 0.46
exon number 7
gene id LOC120567755
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 235257 ~ 243099 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagtgtgtgggaGCAGCATGCAGCAGATCTACAGACAGAGCAACCAAGAGTTTGAAGTTTTTACCACCGTCTTCTCCCCACAAGtgtccCGGGCCAGGACGAGGACTCGACATGTGGAGACAGAGGTGTTGGTGGTGAAGCAGCACCGGTCCCGCTGGCAGAGGGAGCTGGACCTGGACCCGGGAGACCTGAtccaggttctggttcaggagGACGAGGCCTGGTGGTTCGGACGGCTCGCCAACGGAGACGAGGGCTACTTCCTGCGCATGCGTCCAAACGCTGCAGGAGAGGCGGCGCATCAGCGCCTTCACCGGGCCGCCCGGCGCCGGCTGTAACCCGTCCAGAGCCACACCCACGCTGGTGAGGAGGGGGTCGGTACCGGTCGCCGTGACGACAGCAGGCGCCCAATGTGGCTGCACCAGCGGTCTCAGCACTCCGAAGCTGCTGAGGAAGAACAGCATCCTGCGTCCGCTGGGACTCGATGGGTCCCCGGTGGCGTCCGGGCCCCCCAGCTCCCCCAGCCTCCTCCACCGAGTCCTGGCCAAGTCCCGGAGGAAGAGCTGCCCccacctcccccacccccctcccccggAGAACGGCTCTGTCAACACAGCCTTCCTGCCGGACTAGACTGaagactagggttgggcatcgtttggattttaatgattctgattccaattcttcCTTCTGATTCCGGTTCTCATCGATTCTTGATTCAGATTCTTTgatggtggagttgaaacgggtcacatgcctattttcacaaataagaggaaagttttatttttattcaaagggtgggttgcagtttgacggggctttttcaatgtaaaataaagccccactagagcaccgcttactgtgctccatggctgcaacacaacaagcgcctagTCGCTATGGAAACCCaaacttgcgcatattaaattggGAACCCGTGATCAGAtctgaaaccaaatcctccaaacgattccaataaagaaacgattctgtTCGatggaatcggttctcgatgcccaaccctactgaaGACCGCGCAGCtctgtggccggttagctcagtcggtagagcgggcgcacatgtgCAGAGGCTCGTTCCTCGACACAGAAGGTCcaagggtttgaatccgacctgtgacggtccccccccccccctttcatgtctcagCTTTCCTGTCCaataaagacagaaataaaagtagggctgcacaatatatcgtttgtTCATCGTTATCGCAATAATCAAAAGGCGCAATTTACACATCGCGTAAGGCTGCGATAAATCCAATATACACTCATAGATTTTTGTGTCAATTGAAAGAAAATTTCGGTAGAAAAATGCACTTTTAAAAGAAACGGGCATTCTGTTTTTGGTGGGGCACCGCTAAACAGCTGCAAGTCCAACAAATCCTGAGTTTGAATTGCCTGCGGTTACATAAGATAACAACAGCAATAGCAACTGGCGCAATGAACACAATGTGAAAGACACCAAAGAAAAGatcagctttaaaatgtaaatgtcattCTTTCtctagtgctgccttttatattcaattcaatgtttgtTCAacaggcaaggcagctttatttgtagagcacatttcagcaaccgggcaattaaaagtgctttacataaaaacaattaACTACTAGATTAATTACTAGATTAATTAAAAActagaataaaagttacagtgcagtataagaaattaaacattaaagcgcAGTTAAAAACAggtaaacatataaaagcagatagaATACGAGATTTTAGGCTGCTACTATGGGACAATGTATAAGCCGTTGCTCTATACAcgtaataaaaaatgttaaatgattTCATTTCGTTAGttataaattcaacaagcagtttgttgaaTTTTGTCTGAAAGCAGCagacgtaaaaatatcccccTTTCTAAGTAGTCTACCGTCAGCtagctactctctctgtagtctaccgttagctagctagtctaccgttagctagctactctctctgtagtctaccgttagctagctagtctaccgttagctagctactctctctgtagtctactgttagctagctagtctaCCGTCAGCtagctactctctctgtagtctactgttagctagctagtctaccgttagctagctactctctctgtagtctaccgttagctagctactctctctgtagtctaccgttagctagctagtctctctgtagtctaccgttagctagctactctctctgtcgtctaccgttagctaactactctctctgtagtgtaccgttagctagctagtctctctgtagtctaccgttagctagctactctctctgtagtctaccgttagctaactactctctctgtagtgtaccgttagctagctagtctctctgtagtctaccgttagctagctagtctctagctaccgtaaatgtaggctacttttaaaatgccatattttcccctctgggctcaccaaaacagacgtaaaagcatattaaccagtCACTGCACGTGATTGATAGTAAATTATATTacttctttttcagtttttccaaaataggtttaggaatcggaatcgtaaaaatccaacgGTACCTAACCCTCCCGAAAACTGGCCGAAAACTTAATGCAGTAAAAATCTTTTAGTCAGAAAACAAAAAGCTGATTgttattaaaatgtgtaaaacgGTGAAATGTGTGAGAGAATTAGACAGCGAGTCGTGTTCAGCCTCTGGGTTTTTATTGCTCATCTGGAACAATGTTAATAAAGTTTTATGTAcgaaaaacaatttaaatgaaaGAATACAAACATGTCGACTGTGTACACTAGATGTCATTCAAACATTAAAAACTCTGAATTACAATCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149247 lncRNA downstream 5034 173655 ~ 230223 (-) True G110874
TU149238 lncRNA downstream 32938 151167 ~ 202319 (-) True G110865
TU149251 lncRNA downstream 37021 197870 ~ 198236 (-) False G110878
TU149252 lncRNA downstream 37021 197870 ~ 198236 (-) False G110878
TU149253 lncRNA downstream 37021 197870 ~ 198236 (-) True G110878
TU149284 lncRNA upstream 13295 256381 ~ 269399 (-) True G110896
TU149272 lncRNA upstream 14998 258084 ~ 261573 (-) False adhfe1
TU149273 lncRNA upstream 14998 258084 ~ 262448 (-) False adhfe1
TU149274 lncRNA upstream 14998 258084 ~ 261573 (-) False adhfe1
TU149287 lncRNA upstream 17517 260603 ~ 260948 (-) True G110899
XM_039816023.1 mRNA downstream 90209 120850 ~ 145048 (-) True fastk
XM_039816727.1 mRNA downstream 145315 64577 ~ 89942 (-) True LOC120568960
XM_039816726.1 mRNA downstream 145315 66147 ~ 89942 (-) False LOC120568960
XM_039816953.1 mRNA downstream 171797 52608 ~ 63460 (-) True ttc19
XM_039816316.1 mRNA downstream 189276 274 ~ 45981 (-) True LOC120568662
XM_039816038.1 mRNA upstream 14989 258075 ~ 302142 (-) True adhfe1
XM_039814761.1 mRNA upstream 66023 309109 ~ 310062 (-) True LOC120567752
XM_039816880.1 mRNA upstream 83340 326426 ~ 327379 (-) True LOC120569059
XM_039816864.1 mRNA upstream 145605 388691 ~ 397504 (-) True LOC120569047
XM_039816863.1 mRNA upstream 145605 388691 ~ 395071 (-) False LOC120569047
TU149180 other downstream 60392 57407 ~ 174865 (-) True G110840
TU149279 other upstream 23873 266959 ~ 288340 (-) False adhfe1
TU149280 other upstream 23873 266959 ~ 288340 (-) False adhfe1
TU149268 other upstream 132626 375712 ~ 382665 (-) True G110889
TU149269 other upstream 132626 375712 ~ 381616 (-) False G110889
TU149406 other upstream 511177 754263 ~ 766300 (-) True G110957

Expression Profile