RNA id: TU149420



Basic Information


Item Value
RNA id TU149420
length 696
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G110964
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 755921 ~ 796589 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cgttgcggtatcgacaTCGAAGTATTctggtcaagaatattgtgatatccgattttctccatatcgcccagccctagaacACATTAAACGTTACATTAAACGTTATATTAACGTTATATTAAACGAAGAAAAACCAGCTGCATGAGATAATAAATACTGTTTATTGACCAGGTTTACAGAtgattgacagacagacagaaatgcagacagacagacagacagacagagagccagacagacagacagacagacagacagaccgatgGATCTAAGGCACAGGAAGCTGTGAGGTCAGAGGTTTTAGAGAACACCTGAGCAGCCGGGACGCTGccaaaacacacattaaaaaaactaaacagacTCTGATTCCGTCCAATCAGGAGGCAGGAAAATAAAAGGAGGTCAGAGATCACAGCAGCAGGAGGCGGAGTCTTTCAATCAGCTTTTAGCCAGTTTCTtcttctgaaccaatcagctttTAGCCAGTTTCTtcttctgaaccaatcagctttTAGCCAGTTTCTTCTTCTGAACCAGCTCGGCCAGCATCTTATATCGGATCATACACTCCTCCtggaacagagagacagacagacagacagacaggcaggtgggcagacagacagaaagacagagagagagacagagagagagaaacagacagagacaggcagacagagagagagagagacagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640620.1 lncRNA downstream 207269 548335 ~ 548652 (-) True LOC120567842
TU149347 lncRNA downstream 212736 497544 ~ 543185 (-) True G110925
TU149286 lncRNA downstream 358730 375313 ~ 397191 (-) True G110898
TU149283 lncRNA downstream 383230 267135 ~ 372691 (-) True G110895
TU149407 lncRNA upstream 49624 806262 ~ 808340 (-) True G110958
TU149435 lncRNA upstream 54808 811446 ~ 812017 (-) True G110977
TU149436 lncRNA upstream 56827 813465 ~ 822698 (-) False G110978
TU149437 lncRNA upstream 56827 813465 ~ 816853 (-) True G110978
TU149439 lncRNA upstream 56827 813465 ~ 814936 (-) False G110978
XM_039816419.1 mRNA downstream 78187 676331 ~ 677734 (-) True LOC120568738
XM_039817006.1 mRNA downstream 117025 632687 ~ 638896 (-) False inhbab
XM_039817005.1 mRNA downstream 117150 632687 ~ 638771 (-) False inhbab
XM_039817007.1 mRNA downstream 117245 632687 ~ 638676 (-) True inhbab
XM_039815532.1 mRNA downstream 132791 593907 ~ 623130 (-) True amph
XM_039816947.1 mRNA upstream 66414 823052 ~ 839766 (-) True bfsp2
XM_039816949.1 mRNA upstream 66895 823533 ~ 839766 (-) False bfsp2
XM_039816971.1 mRNA upstream 87170 843808 ~ 848645 (-) True ccr9a
XM_039814840.1 mRNA upstream 138869 895507 ~ 901196 (-) True LOC120567797
XM_039815035.1 mRNA upstream 294259 1050897 ~ 1053660 (-) False LOC120567934
TU149268 other downstream 373256 375712 ~ 382665 (-) True G110889
TU149269 other downstream 374305 375712 ~ 381616 (-) False G110889
TU149279 other downstream 467581 266959 ~ 288340 (-) False adhfe1
TU149280 other downstream 467581 266959 ~ 288340 (-) False adhfe1
TU149262 other downstream 512835 235257 ~ 243086 (-) False LOC120567755
TU149470 other upstream 92544 849182 ~ 849492 (-) True G110988
TU149680 other upstream 248433 1005071 ~ 1005925 (-) True G111136
TU149674 other upstream 252256 1008894 ~ 1010100 (-) True G111134
TU149667 other upstream 256181 1012819 ~ 1021435 (-) False G111133
TU149672 other upstream 263825 1020463 ~ 1092725 (-) True G111133

Expression Profile