RNA id: TU149482


Basic Information

Item Value
RNA id TU149482
length 290
lncRNA type read_through
GC content 0.49
exon number 2
gene id G110996
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 910392 ~ 985714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagactcatacacacacacacacacagaaaaacacatacagagacacacacacgcagtcgcacacacacacacacacacatacagacacacacacacaaacacacagacagacgtgtTATTTGTTAtcagtccctccctcctcctgacCTGACCTGAActatagcacacacacacagactcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149473 lncRNA upstream 29258 850062 ~ 881134 (+) True G110989
TU149472 lncRNA upstream 55857 850933 ~ 854535 (+) False G110989
TU149169 lncRNA upstream 70866 829073 ~ 839526 (+) True G110837
TU149165 lncRNA upstream 87904 815946 ~ 822488 (+) True G110833
TU149156 lncRNA upstream 102010 806746 ~ 808382 (+) False G110829
TU149521 lncRNA downstream 2603 988317 ~ 991333 (+) True G111022
TU149523 lncRNA downstream 12870 998584 ~ 1005265 (+) True G111024
TU149524 lncRNA downstream 18967 1004681 ~ 1007350 (+) True G111025
TU149526 lncRNA downstream 19610 1005324 ~ 1005780 (+) True G111026
TU149513 lncRNA downstream 34690 1020404 ~ 1021749 (+) True G111016
XM_039815675.1 mRNA upstream 146261 757121 ~ 764131 (+) True c11h7orf25
XM_039816042.1 mRNA upstream 153896 737805 ~ 756496 (+) True dnajc1
XM_039816918.1 mRNA upstream 179168 693088 ~ 731224 (+) True LOC120569073
XM_039814703.1 mRNA upstream 261920 646773 ~ 648472 (+) True LOC120567728
XM_039816040.1 mRNA upstream 546208 363753 ~ 364184 (+) True LOC120568476
XM_039815040.1 mRNA downstream 7645 993359 ~ 998215 (+) True LOC120567936
XM_039815041.1 mRNA downstream 7646 993360 ~ 998215 (+) False LOC120567936
XM_039815042.1 mRNA downstream 8377 994091 ~ 998215 (+) False LOC120567936
XM_039815044.1 mRNA downstream 37913 1023627 ~ 1026824 (+) True LOC120567938
XM_039815034.1 mRNA downstream 49656 1035370 ~ 1039308 (+) True LOC120567933
TU149101 other upstream 155963 745169 ~ 754429 (+) False dnajc1
TU149102 other upstream 155963 745169 ~ 754429 (+) False dnajc1
TU149103 other upstream 165354 737824 ~ 745038 (+) False dnajc1
TU149084 other upstream 294396 612113 ~ 615996 (+) True G110789
TU149056 other upstream 385241 523450 ~ 525151 (+) True G110768
TU149501 other downstream 94759 1080473 ~ 1092725 (+) False cdyl
TU149498 other downstream 102883 1088597 ~ 1092725 (+) False cdyl
TU149499 other downstream 102883 1088597 ~ 1092725 (+) False cdyl
TU149593 other downstream 256935 1242649 ~ 1336191 (+) True G111076
TU149588 other downstream 336528 1322242 ~ 1342297 (+) True si:ch1073-184j22.1

Expression Profile