RNA id: XM_039816047.1


Basic Information

Item Value
RNA id XM_039816047.1
length 3810
RNA type mRNA
GC content 0.55
exon number 7
gene id cdyl
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1020863 ~ 1092763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCCGGAGAGCCAGTGTGCTAGCAGTGTGCTAACGGTGTgtgctaacagctaacagctagcagctagttTAAGGTGTTTAAAGAGTCCTCGCGCCGTCTCCCAGCAGCTCGAGGCCGACGCTCTTCTTCTACTCTCTCGCTCATGTTGCTGCTCGACTGAAGAAGCTTCTGGAAGCTGCTCGTGCCCGCGAACAGTCTCCATGGCTACGGAAGAGTTCTACGAGGTGGAGCGTGTGCTGGACAAGCGCAGGAACAGGAAGGGGAAGGTGGAGTACCTGGTGCGTTGGCGTGGTTACGGCGCCGAGGGAGACACCTGGGAGCCCGAGGCCCACCTGTCCACGTGCATGGTCTACGTGCACGACTTCCACCGCCAGCAGGCCGAGCGCCAGAGGGACGCCACGTTACTGCGCTCCACGCGCCACTGCAGCCCCGCCCACAGGGCGCCCTACAGGCCCCCCCCACGCAGTGACATCATCGGAGCCCCCCTCGGCCAGGCgctgcccccccccctgctCGGGCTCAGGAACTCCCAGCAGCCCTCTGTGATGTCAGCGTCTCCGTCTCCAGGTGGTTCAGCCCGGCGCAGTATGGACCTGTCTAAGACGGGCATTAAGATCCTGGTCCCGAGGagccctctgattggctgccgGGACTCTGAGGAGTCTCCCAGCGAGGCCGGCGCCGTGGAGGCCGTCGCCGTGGAGACGCACGCCGTCCCGCCGGAGGTGGCTCTGGTGGGGGGGGCGCTGGGGCCCGGAGAGGAGAGGGCCCGCATGGGGACCAGGCCCCGCAGCCAGAACCCCCCAGGACCCCCCCCCAGGCTGCCCCTCACACCCACAGCCATGCGCTCACTCTGCAACACAGGTAACTCTGGGTTGATGGAGGCGGTCGCTGCCAACGGGATGTCTGGCGTGCAGAGCGTGGTTACCGGGGCGACCGGTGTCACTGGGGCGACCGGCGCCACCGGGAAGCGGCGTCTGGAGGAGCGCTCTGCGTTCGACAAGCGTCTGAGGTTCAGCGTTCGCCAGACGGAGAGCGCCTACCGCTACCGCGACATCGTGGTGAAGAAACAGGACGGCTTCACGCACATCCTGCTGTCGACCAAGAGCTCTGAGAACAACACGCTCAACCCTGAGGTAATGACCCCCAAAACTGCCCCAAAgaCGTTTGTGAACTCGTTCATCCAGTTCAGGAAGCCGATCGTTGCCGCGGTGAACGGCGCGGCGCTGGGCCTCGGCGCCGCCCTGCTGCCGCTGTGTGACGTGGTGTGGGCCAATGAGAAGGCTTGGTTCCAGACGCCGTACGCATCATACGGCCAGACGCCAGACGCCTGCTCGTCCTTCACCTTCCCCCGCATCATGGGCCTCGCATCGgccaATGAGCTGCTGCTGAGCGGCAGGAAGTTGACAGCCCAGGAGGCGGGCTCTAAAGGTCTGGTGTCTCAGGTCCTCTGGCCGGGAACCttcacacaggaagtgatgctGAGAGTCAAAGAGCTGGTAGCAGTGGACTCTCTGgtCCTGCGTGAGTCCAAAGCCCTGATGAGGAACACCAGCCGCAGTGCCCTGGAGCAAGCCAACGAGCGCGAGTGTGAATCCCTGAAGAGAGTGTGGGGCTCCTCGCAGGGAACCGACGCCATCCTGCAGTACCTGCAGCGGGGAACCGAGCTCTGCTAGAACCAGGACCCAGGACACAGCACATTCTGAGTAGTGACTCAGCACATTCTAAGCAGTGACTCAAGACATTCTGAGTCTGAGCATGACTCAGCACATTCTGAGTCTGAGCATGACTCAGCACATTCTGAGTCTGAGCATGACTCAGCACATTCTGAGTCTGAGCATGACTCAGCCCATTCTGAGTCTGAGCATGACTCGGCACATTCTGAGCATGACTCGGCACATTCTGAGCATGACTCAGCACATTCTAAGCAGTGACTCCAAGACATTCTGAGTCTGAGCATGACTCGGCACATTCTGAGCATGACTCGGCACATTCTGAGCATGACTCGCCACATTCTGAGCAGTGACTCGCCACATTCTGAGCAGTGACTCGCCACATTCTGAGCAGTGACTCGCCACATTCTGAGCAGTGACTCGCCACATTCTGAGCTGGACAGAAAACCTGGAACGTTTCCTCCTCTTGTTGTGAACATGTAAGTTATATTTTCAGCGGTTTCAGGTTTCTGTAAATCCTCTCGTTCTCTGTGGCGAGGGAAACGGCGAGGGAAATGGCGAGGGAAACGGGCGAGGGAAACGGGATTAATTATCACAGATTTATAAATGCTGAGGGCGCTGAGATCTCTGGCAGTCTGAACGgaccctgaacacaccttcaGAGCTTTAAACAGCTCATCAGACTGAGAGGCTAACAGTTTCCCCCTGCcttcagtctttgtgctaagctaggctaacagttTCCCCCTGCcttcagtctttgtgctaagctaggctaacagttTCCCCCTACcttcagtctttgtgctaagctaggctaacagttTCCCCCTGCCGCCAGTCTTtttgctaagctaggctaacagttTCCCCCTGcctccagtctttgtgctaagctcaGCTAACAGTTTCCCCGcctccagtctttgtgctaagctaggctaacagttTCCCCCTGcctccagtctttgtgctaagctaggctaaccgtTTCCCCCTGCCTCCAGTCTTTGTgttaagctaggctaacagttTCCCCCTGcctccagtctttgtgctaagctaggctaacagttGTTGACACTCCGAGAACGAGAGGATTTCTAAAATGTTGGACTGTTCCTTTGAaaggtgacctttgacctctctgATGAATTTCTTCACGGAGGAGTAAACAGGAAGTGGAGGGAGGAGTAAACAGGAAGTGGAGGGTGGAGTAAACAGGAAATGAACTACCAACGCTGACCTGACTCCATCAGGACAAACTGAACACGTTCAGACTCAGAGACTccacacagatgcattctgggtaaATGTGAGAAGGATTGTGATGTGAGCATGTGCAGAGCTACGGCCACACCACTGGGACAAAGTGAGGAACTAAAGAGAGGCTGATGGTCTCTTAAAGCTAACTGGTCAGAGCCCAACAACGCTCACTTTTACTGGCTGAACGCAGCTGCCATGGTCCCTGAAAGCACCGCCAGATGAAGGTGCTTTCAGGGACCACTGAGCTGTACACAGGGCtttaaattaatttgttttgATCACCAGCTGACATGGCTAGTTGGTTTTAAAGttgccagccaatcagatcgtCCGCTAGCCGAACTGAAGTAGACTTTCAGCTGATCGTGTTCGTTTCTCGCCGTTCTGGTCGTCTTCTCCGTGTCAGCGTAGCTCGCAATCGCTACGGCACGCTAGGCACGTAGCACGCTGTTGTATGACACGTCACAACAGAGTGCTCATGGGATATGTAGGATtagtactacacacacacacacacacacacacacacacggacacacagagacatacagacacacacatagacatacacacagagagacacacacacacacagagacacacagagacatacacacacatatacacacacacacacacacacacacacacatcgcggCCATCTGTAACTATGTGCTTTGTCCGAGTGGGGTAGCCGTAGCTATGAATTGTGGGTAGATATTGacagtaagtgggcgtggctatgaATTCTGGGTAAATATTGactaaagggggcgtggcttgtgAATCATGTGATCATGCATCTGAACAGGAAGTTATTAATTATTAAACCGTTTGTGTGTAAAATTAAACAACTCATATATTTCAGAA

Function

GO: NA

KEGG:

id description
K00653 CDY; chromodomain protein Y

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149509 lncRNA upstream 9800 1060314 ~ 1060747 (+) True G111012
TU149541 lncRNA upstream 20185 1049919 ~ 1050362 (+) True G111041
TU149540 lncRNA upstream 26385 1043518 ~ 1044162 (+) True G111040
TU149534 lncRNA upstream 38171 1031000 ~ 1032376 (+) True G111034
TU149530 lncRNA upstream 46045 1024074 ~ 1024502 (+) True G111030
TU149555 lncRNA downstream 48277 1141040 ~ 1201498 (+) True G111052
XR_005640682.1 lncRNA downstream 84535 1177298 ~ 1178632 (+) True LOC120568206
XR_005640680.1 lncRNA downstream 84535 1177298 ~ 1178632 (+) False LOC120568206
XR_005640681.1 lncRNA downstream 84696 1177459 ~ 1178632 (+) False LOC120568206
XR_005640673.1 lncRNA downstream 90830 1183593 ~ 1185428 (+) True LOC120568205
XM_039816046.1 mRNA upstream 7148 1040826 ~ 1063399 (+) True LOC120568483
XM_039815034.1 mRNA upstream 31239 1035370 ~ 1039308 (+) True LOC120567933
XM_039815044.1 mRNA upstream 43723 1023627 ~ 1026824 (+) True LOC120567938
XM_039815040.1 mRNA upstream 72332 993359 ~ 998215 (+) True LOC120567936
XM_039816050.1 mRNA downstream 59357 1152120 ~ 1200581 (+) True wdr33
XM_039815564.1 mRNA downstream 115405 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039817012.1 mRNA downstream 133287 1226050 ~ 1287799 (+) True pex5lb
XM_039816703.1 mRNA downstream 229451 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039816053.1 mRNA downstream 582979 1675742 ~ 1683286 (+) True LOC120568494
TU149506 other upstream 85294 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149101 other upstream 316118 745169 ~ 754429 (+) False dnajc1
TU149102 other upstream 316118 745169 ~ 754429 (+) False dnajc1
TU149103 other upstream 325509 737824 ~ 745038 (+) False dnajc1
TU149084 other upstream 454551 612113 ~ 615996 (+) True G110789
TU149593 other downstream 149886 1242649 ~ 1336191 (+) True G111076
TU149588 other downstream 229479 1322242 ~ 1342297 (+) True si:ch1073-184j22.1
TU149630 other downstream 347890 1440653 ~ 1441147 (+) True G111106
unassigned_transcript_479 other downstream 351400 1444163 ~ 1444665 (+) True LOC120567879
unassigned_transcript_480 other downstream 357626 1450389 ~ 1459918 (+) True LOC120567883

Expression Profile