RNA id: TU149541


Basic Information

Item Value
RNA id TU149541
length 254
lncRNA type intronic
GC content 0.46
exon number 2
gene id G111041
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1049919 ~ 1050362 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTTCCAATTAAATGCCACAAAAACCAAGGATATGGTCATTGATTTTAGGAAAGTATCCCTCCCACCATCTCAGACGTAGTATCTGGGAACATCAGGGACAAAAACCACCTCAGCCATATTGTAAAGGTGGCTGGCAAGGTGACAGGTTTCCCACAGTCCCCCTTGATGGTTATCTTTGACCAGCAAGTTCTTCGCAAGGCCCGGTCTATATTAGACTGTACAGACCCCACCCTTCACTCTGAGTTCGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149540 lncRNA upstream 5757 1043518 ~ 1044162 (+) True G111040
TU149534 lncRNA upstream 17543 1031000 ~ 1032376 (+) True G111034
TU149530 lncRNA upstream 25417 1024074 ~ 1024502 (+) True G111030
TU149513 lncRNA upstream 28170 1020404 ~ 1021749 (+) True G111016
TU149524 lncRNA upstream 42569 1004681 ~ 1007350 (+) True G111025
TU149509 lncRNA downstream 9952 1060314 ~ 1060747 (+) True G111012
TU149555 lncRNA downstream 90678 1141040 ~ 1201498 (+) True G111052
XR_005640682.1 lncRNA downstream 126936 1177298 ~ 1178632 (+) True LOC120568206
XR_005640680.1 lncRNA downstream 126936 1177298 ~ 1178632 (+) False LOC120568206
XR_005640681.1 lncRNA downstream 127097 1177459 ~ 1178632 (+) False LOC120568206
XM_039815034.1 mRNA upstream 10611 1035370 ~ 1039308 (+) True LOC120567933
XM_039815044.1 mRNA upstream 23095 1023627 ~ 1026824 (+) True LOC120567938
XM_039815040.1 mRNA upstream 51704 993359 ~ 998215 (+) True LOC120567936
XM_039816047.1 mRNA downstream 20185 1070547 ~ 1092763 (+) True cdyl
XM_039816050.1 mRNA downstream 101758 1152120 ~ 1200581 (+) True wdr33
XM_039815564.1 mRNA downstream 157806 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039817012.1 mRNA downstream 175688 1226050 ~ 1287799 (+) True pex5lb
XM_039816703.1 mRNA downstream 271852 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
TU149506 other upstream 64666 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149101 other upstream 295490 745169 ~ 754429 (+) False dnajc1
TU149102 other upstream 295490 745169 ~ 754429 (+) False dnajc1
TU149103 other upstream 304881 737824 ~ 745038 (+) False dnajc1
TU149084 other upstream 433923 612113 ~ 615996 (+) True G110789
TU149501 other downstream 30111 1080473 ~ 1092725 (+) False cdyl
TU149498 other downstream 38235 1088597 ~ 1092725 (+) False cdyl
TU149499 other downstream 38235 1088597 ~ 1092725 (+) False cdyl
TU149593 other downstream 192287 1242649 ~ 1336191 (+) True G111076
TU149588 other downstream 271880 1322242 ~ 1342297 (+) True si:ch1073-184j22.1

Expression Profile