RNA id: TU149588


Basic Information

Item Value
RNA id TU149588
length 3950
RNA type TUCP
GC content 0.47
exon number 8
gene id si:ch1073-184j22.1
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1322214 ~ 1342351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAGAGGAAGAACACCGTCATTCGTCTGCAGTGTGAGCGACTGAAAGacaagagaggaaaaagaggaggaaaaagaggaggaggcagcgagccacacagagagaaactttgctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacagactctctgcTGGAAAGAAAGCTCACACACGTCTGTGTGTTTGACAACGGAAAGTTTCCTGAAACCTTTCCTAGAAAACTCTTTCCTCCGACTTTTATTCAGCTGATCGCAGAGGAGCAAACCTACAGCAGTGCATGATGGGAACGTCTTAAGTCCACACGGACCCCTGAAGACCTGGACCCCTGAAGACCTGAACCCCTTCGTGTCCTGCAGCGGTGGAAgagACAGGCAGCATGCCGGCCAGGTCGTCCCAGGGACGGAGCTCTCCGGCTGGGGCAGGAGggcggctgctgctgcctctgctCCTGggtctgatgatgatgacgatgaagGTGATAGCGGCGGCGAGCGTCGAGGAGGCGGAGAGCGGGGAGAGCGAGGAGATCCTGGAGGAGGACGATGAGGCCGTCAGCGCGGAGATGCTGGTAAGAAATCTGCACCGGAACTCCAGTTCAACCAACGCCTTCTCACCAACGGGTTTGTATGACATCGTACGAAAGGCCGGTCGTGTGGCTCTGTATCAGAGGCCGTTacagtatttgtatttgtatttattataaggatccccattagctgacgccTAGACGACCAGCTAGTTTAGTGTAGCCAATAAAAAGTGAGcgttggtttgtttgtgtttagttAAAAGTAGTAATAATTAGTAAGGTTTTGTTTAAgtaaataagtttatttgattggaacaatgcacattaatcaacatttctgtaaatggtCCAGTgctagccagtcggctaattttcaactgtagtcctagtatgcatgtctttatgatGGGAAGAAAACAGAGCACCCAGACAAAAcccatgcaaactccacacagaaagaccCAGAACAACGTGGACTTGAACCCAGAACCATCTTGCTGTGAGTTAGAAGTgataaccactgagccaccatgCTGTTGCTATCTTCTTTGCATAGTTTAGTGCAGGCatgcactgaatccaggatTCAGATTcagctgaatattgggctttttgacggggttcggtttcttCCAAACCTTAGAATATATTCCCAgtgaaccgaaccctacgcttgcactcggcggactacgctggtcgccgtaacGACGGCGCAGttgattacaggaaggtgtttatgtaggtggagcgttcaatgcagtaggctgtgagaaagtggacatggaactggtgagcagaacaagttgttgtttggcagtactttcagtcaaaagaaggccattcaagtccagctacatgttcaatctgttcaacgctgattggtctggtggtggcgaggaccctaaactatacacaacatggccgctgttacaacatctggccTGAAAcgtgaaagaatacgagttgtgcacgaaggaatctccagacagcagccagaatgcagcaacttcaggtacggcaaaggaaggccagtccctgtttacttcattcatgtgtttactgtggtcatggactgaggatgggaggaggagtcagcacaatctcaaccaggAGATTCAGGATTtggcccaaaaatctggatttggtgcatccatAGTTTAgtggtttaaaggtcccatgacatgctgctttttggatgcttttatataggccttagtggtcccctaatactgtatctgaagtcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatataggccttagtggtcccctaatactgtatctgaagtctcttttatataggccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtcttttttatatagaccttagtggtcccctaatactgtatcttatatagctccttatgacctcataaggagacgattcctgattggcccatctgagctttcattttctcaaaggcagagcaggatacccaggactcggtttacacctatcaccatttctagccactagggggccataggcaggctgggggaactcatattaatgttaaaaaacctcataaagtggaattttcatgccatgggacctttaattctTATTTTTAAAGTGTCATCACATCCATAGGCTCTTTCTTTTCGTTGTAGTTTGTGCACCTGTGATTCTGTTAATCCCTTTTTTAAACTCTTATGTTAATTAATAACTTTAATGTATCAACAACACCTGTCATTATGTTGCTTCCTTAACGAGCTGGCTCCTAACATGCAGAAATGTGGCGTTTTAAACTTTTGAAGCTATACTTTATTGTGGTTGTTGTCTTCCAGGAGCCACTGCAGATCTGTCCAGTGTCTCCGACGCTTTTCCCACATTtttgaagttattttttttttccgagGTTTGTGTCACATTTTTTGACATCTCGTTCTGCAGAAACGTGGCGTTTTAAACATTTGAACCTACTTTGTTGTGGTCGCTGTCCTCGGGTCTGTCCAGATTGTCGCCAATGCTTTTTTTAATGACGTTTTAAGTCAGTCTCTTTTTCCGATATTTACTGTAtgcaacattttgaaatattttaagaCAAATCTTGTTCTGCAGAAATGTGGCGTATTAAACATTTGAGCCTATACTTGGTGTCTTCCAGGAGCCGCTGTCCTCGGATCTGTCCAGAGTAACTCCTCTCAACTCCTGGCTGATCTTCAGAAGAAACTCCAACAAGGGGGACAACCGGAGAAACAAAGGATCCAGGAGAACCTCAAAGCATGGTCTTCCCGGGCCTCCTGGCCCTCCGGGCCCCCAGGGGCCTCCAGGGCCCCCTGCCCCCCTcctgccccaacaacagcagCTGATCCAGGATCTGCAGCTCAAACTGAGAGAGCTGGCAGCAGGAGgagtgtgtttcctgtgtgatcGGCCTCCTCGCGTCTCCACCTCCTTCCTCAGGCGCCTCCCGGCAGACGCCATCATCCCTCGCCGCAGCCTGCTGGAGCTGCAGCCATTCAGCCagCCCTCCGACTCAGAGCGGAGCCTCCAGAGAGGTCAGAGCTTCAACGCCAGCACTGGGCGCTACGCCGCAGCTGTATCCGGCTTCTACCAGCTCACCGCCAGCCTCCTCATAGaatcaGGAGACAGAGTCCAGGTGAGACTGAGAGACAGCGTGAGAGCAGCAATCTGCATCGAGTCGCTCTGCCAGAGCAACCTcTCTGTGGAGTCTGTGATGGGCGTGGCAGCAGCGGGAGGAACATTCAGCATCCTACTGACAGGAACGCTCTATCTACAGGCTGGAGAGtacgtgtctgtgtttgtggacAACGCCACCGGGTCGACCATCAGGGTCCTGCAGGACTCTCTGTTCTCTGGGATCCTGCTGGGAGTCTGAACACTTCGGACCACGAGCAGCCACGTGGTTCCACAGCAACCGACAGGGctgcacatcatcatcatcggaTATCCATACGCTTCACAAAATAGTGCCGTCGTTTATGATTTCCTGTCAGAGGCTAAATGATCTTCTGCAGAGCTGAACTCTGGAGCATCATCTAGTGGACTTTATAAGAACTGGGACTCACCTTCTTCTCGGGACGACATTTATTTAACTGATCTTCGAACGGCTGATgatattttcatatttcatacGTTATCGAATCATCATATTTAAGCAGTTTCATGCCAAAGAGTTTTCCTTTCAGGCCATCAAAACCCTGAAACAGAAGACATTTCTTAAAGTCAAACTATAAAGAATAATCACCTGATCCTGCTCGTCagactttaatattaatatttattctCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149591 lncRNA upstream 90667 1230809 ~ 1231575 (+) True G111074
TU149566 lncRNA upstream 115736 1205789 ~ 1206506 (+) True G111060
TU149556 lncRNA upstream 120744 1200825 ~ 1201498 (+) False G111052
XR_005640675.1 lncRNA upstream 136814 1183593 ~ 1185428 (+) False LOC120568205
TU149609 lncRNA downstream 41643 1383940 ~ 1384169 (+) True G111092
TU149610 lncRNA downstream 42907 1385204 ~ 1385497 (+) True G111093
TU149613 lncRNA downstream 48983 1391280 ~ 1391674 (+) True G111096
TU149623 lncRNA downstream 69632 1411929 ~ 1416565 (+) True G111101
TU149625 lncRNA downstream 69632 1411929 ~ 1469023 (+) False G111101
XM_039817012.1 mRNA upstream 34443 1226050 ~ 1287799 (+) True pex5lb
XM_039815564.1 mRNA upstream 107766 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039816050.1 mRNA upstream 121661 1152120 ~ 1200581 (+) True wdr33
XM_039816047.1 mRNA upstream 229479 1070547 ~ 1092763 (+) True cdyl
XM_039816046.1 mRNA upstream 258843 1040826 ~ 1063399 (+) True LOC120568483
XM_039816053.1 mRNA downstream 333445 1675742 ~ 1683286 (+) True LOC120568494
XM_039816058.1 mRNA downstream 546826 1889123 ~ 1890298 (+) True LOC120568500
XM_039816059.1 mRNA downstream 555758 1898055 ~ 1906798 (+) True LOC120568501
XM_039814970.1 mRNA downstream 581854 1924151 ~ 1935777 (+) True LOC120567896
XM_039816079.1 mRNA downstream 664503 2006800 ~ 2008880 (+) False LOC120568507
TU149501 other upstream 229517 1080473 ~ 1092725 (+) False cdyl
TU149498 other upstream 229517 1088597 ~ 1092725 (+) False cdyl
TU149499 other upstream 229517 1088597 ~ 1092725 (+) False cdyl
TU149506 other upstream 336989 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149102 other upstream 567813 745169 ~ 754429 (+) False dnajc1
TU149630 other downstream 98356 1440653 ~ 1441147 (+) True G111106
unassigned_transcript_479 other downstream 101866 1444163 ~ 1444665 (+) True LOC120567879
unassigned_transcript_480 other downstream 108092 1450389 ~ 1459918 (+) True LOC120567883
unassigned_transcript_481 other downstream 121805 1464102 ~ 1464596 (+) True LOC120567882
TU149638 other downstream 162312 1504609 ~ 1505015 (+) True G111112

Expression Profile