RNA id: XM_039816703.1


Basic Information

Item Value
RNA id XM_039816703.1
length 1849
RNA type mRNA
GC content 0.54
exon number 9
gene id si:ch1073-184j22.1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1322214 ~ 1342351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAGCACACGGAGAGAGGGATCAGAGACGGAGAGGAAGAACACCGTCATTCGTCTGCAGTGTGAGCGACTGAAAGacaagagaggaaaaagaggaggaaaaagaggaggaggcagcgagccacacagagagaaactttgctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacagactctctgcTGGAAAGAAAGCTCACACACGTCTGTGTGTTTGACAACGGAAAGTTTCCTGAAACCTTTCCTAGAAAACTCTTTCCTCCGACTTTTATTCAGCTGATCGCAGAGGAGCAAACCTACAGCAGTGCATGATGGGAACGTCTTAAGTCCACACGGACCCCTGAAGACCTGGACCCCTGAAGACCTGAACCCCTTCGTGTCCTGCAGCGGTGGAAgagACAGGCAGCATGCCGGCCAGGTCGTCCCAGGGACGGAGCTCTCCGGCTGGGGCAGGAGggcggctgctgctgcctctgctCCTGggtctgatgatgatgacgatgaagGTGATAGCGGCGGCGAGCGTCGAGGAGGCGGAGAGCGGGGAGAGCGAGGAGATCCTGGAGGAGGACGATGAGGCCGTCAGCGCGGAGATGCTGGAGCCGCTGTCCTCGGATCTGTCCAGAGTAACTCCTCTCAACTCCTGGCTGATCTTCAGAAGAAACTCCAACAAGGGGGACAACCGGAGAAACAAAGGATCCAGGAGAACCTCAAAGCATGGTCTTCCCGGGCCTCCTGGCCCTCCGGGCCCCCAGGGGCCTCCAGGGCCCCCTGCCCCCCTcctgccccaacaacagcagCTGATCCAGGATCTGCAGCTCAAACTGAGAGAGCTGGCAGCAGGAGgagtgtgtttcctgtgtgatcGGCCTCCTCGCGTCTCCACCTCCTTCCTCAGGCGCCTCCCGGCAGACGCCATCATCCCTCGCCGCAGCCTGCTGGAGCTGCAGCCATTCAGCCagCCCTCCGACTCAGAGCGGAGCCTCCAGAGAGGTCAGAGCTTCAACGCCAGCACTGGGCGCTACGCCGCAGCTGTATCCGGCTTCTACCAGCTCACCGCCAGCCTCCTCATAGaatcaGGAGACAGAGTCCAGGTGAGACTGAGAGACAGCGTGAGAGCAGCAATCTGCATCGAGTCGCTCTGCCAGAGCAACCTcTCTGTGGAGTCTGTGATGGGCGTGGCAGCAGCGGGAGGAACATTCAGCATCCTACTGACAGGAACGCTCTATCTACAGGCTGGAGAGtacgtgtctgtgtttgtggacAACGCCACCGGGTCGACCATCAGGGTCCTGCAGGACTCTCTGTTCTCTGGGATCCTGCTGGGAGTCTGAACACTTCGGACCACGAGCAGCCACGTGGTTCCACAGCAACCGACAGGGctgcacatcatcatcatcggaTATCCATACGCTTCACAAAATAGTGCCGTCGTTTATGATTTCCTGTCAGAGGCTAAATGATCTTCTGCAGAGCTGAACTCTGGAGCATCATCTAGTGGACTTTATAAGAACTGGGACTCACCTTCTTCTCGGGACGACATTTATTTAACTGATCTTCGAACGGCTGATgatattttcatatttcatacGTTATCGAATCATCATATTTAAGCAGTTTCATGCCAAAGAGTTTTCCTTTCAGGCCATCAAAACCCTGAAACAGAAGACATTTCTTAAAGTCAAACTATAAAGAATAATCACCTGATCCTGCTCGTCagactttaatattaatatttattctCTGGATGTGATAAACAAGTTGTGAATGATTCTGATATTAAAACCTTGTCTTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149591 lncRNA upstream 90639 1230809 ~ 1231575 (+) True G111074
TU149566 lncRNA upstream 115708 1205789 ~ 1206506 (+) True G111060
TU149556 lncRNA upstream 120716 1200825 ~ 1201498 (+) False G111052
XR_005640674.1 lncRNA upstream 136786 1183593 ~ 1185428 (+) False LOC120568205
TU149609 lncRNA downstream 41589 1383940 ~ 1384169 (+) True G111092
TU149610 lncRNA downstream 42853 1385204 ~ 1385497 (+) True G111093
TU149613 lncRNA downstream 48929 1391280 ~ 1391674 (+) True G111096
TU149623 lncRNA downstream 69578 1411929 ~ 1416565 (+) True G111101
TU149625 lncRNA downstream 69578 1411929 ~ 1469023 (+) False G111101
XM_039817012.1 mRNA upstream 34415 1226050 ~ 1287799 (+) True pex5lb
XM_039815564.1 mRNA upstream 107738 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039816050.1 mRNA upstream 121633 1152120 ~ 1200581 (+) True wdr33
XM_039816047.1 mRNA upstream 229451 1070547 ~ 1092763 (+) True cdyl
XM_039816046.1 mRNA upstream 258815 1040826 ~ 1063399 (+) True LOC120568483
XM_039816053.1 mRNA downstream 333391 1675742 ~ 1683286 (+) True LOC120568494
XM_039816058.1 mRNA downstream 546772 1889123 ~ 1890298 (+) True LOC120568500
XM_039816059.1 mRNA downstream 555704 1898055 ~ 1906798 (+) True LOC120568501
XM_039814970.1 mRNA downstream 581800 1924151 ~ 1935777 (+) True LOC120567896
XM_039816079.1 mRNA downstream 664449 2006800 ~ 2008880 (+) False LOC120568507
TU149501 other upstream 229489 1080473 ~ 1092725 (+) False cdyl
TU149498 other upstream 229489 1088597 ~ 1092725 (+) False cdyl
TU149499 other upstream 229489 1088597 ~ 1092725 (+) False cdyl
TU149506 other upstream 336961 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149102 other upstream 567785 745169 ~ 754429 (+) False dnajc1
TU149630 other downstream 98302 1440653 ~ 1441147 (+) True G111106
unassigned_transcript_479 other downstream 101812 1444163 ~ 1444665 (+) True LOC120567879
unassigned_transcript_480 other downstream 108038 1450389 ~ 1459918 (+) True LOC120567883
unassigned_transcript_481 other downstream 121751 1464102 ~ 1464596 (+) True LOC120567882
TU149638 other downstream 162258 1504609 ~ 1505015 (+) True G111112

Expression Profile