RNA id: TU149609


Basic Information

Item Value
RNA id TU149609
length 230
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G111092
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1383940 ~ 1384169 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGCCAggtgttgtctctctctctctccgtcaggAGGAAGCCTGTGGGTTTTTCTGCCAGACTTGAGATTTAGAAACACCAATCGACAGCTCAGTTTGTCTGCCCTGCGGGGAAACACAGCGACACCAGAACTCACAACCAGCCTCCACCGAGCTGCACCCATGGGACAGCTTTAGTCTGAACCTAAACGCTGTCCCGTGTCTTCCTTCAGTGTGGTTGGGAGTTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149591 lncRNA upstream 152365 1230809 ~ 1231575 (+) True G111074
TU149566 lncRNA upstream 177434 1205789 ~ 1206506 (+) True G111060
TU149556 lncRNA upstream 182442 1200825 ~ 1201498 (+) False G111052
XR_005640674.1 lncRNA upstream 198512 1183593 ~ 1185428 (+) False LOC120568205
TU149610 lncRNA downstream 1035 1385204 ~ 1385497 (+) True G111093
TU149613 lncRNA downstream 7111 1391280 ~ 1391674 (+) True G111096
TU149623 lncRNA downstream 27760 1411929 ~ 1416565 (+) True G111101
TU149625 lncRNA downstream 27760 1411929 ~ 1469023 (+) False G111101
TU149632 lncRNA downstream 67705 1451874 ~ 1675945 (+) False LOC120568494
XM_039816703.1 mRNA upstream 41589 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039817012.1 mRNA upstream 96141 1226050 ~ 1287799 (+) True pex5lb
XM_039815564.1 mRNA upstream 169464 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039816050.1 mRNA upstream 183359 1152120 ~ 1200581 (+) True wdr33
XM_039816047.1 mRNA upstream 291177 1070547 ~ 1092763 (+) True cdyl
XM_039816053.1 mRNA downstream 291573 1675742 ~ 1683286 (+) True LOC120568494
XM_039816058.1 mRNA downstream 504954 1889123 ~ 1890298 (+) True LOC120568500
XM_039816059.1 mRNA downstream 513886 1898055 ~ 1906798 (+) True LOC120568501
XM_039814970.1 mRNA downstream 539982 1924151 ~ 1935777 (+) True LOC120567896
XM_039816079.1 mRNA downstream 622631 2006800 ~ 2008880 (+) False LOC120568507
TU149588 other upstream 41643 1322242 ~ 1342297 (+) True si:ch1073-184j22.1
TU149593 other upstream 47749 1242649 ~ 1336191 (+) True G111076
TU149501 other upstream 291215 1080473 ~ 1092725 (+) False cdyl
TU149498 other upstream 291215 1088597 ~ 1092725 (+) False cdyl
TU149499 other upstream 291215 1088597 ~ 1092725 (+) False cdyl
TU149630 other downstream 56484 1440653 ~ 1441147 (+) True G111106
unassigned_transcript_479 other downstream 59994 1444163 ~ 1444665 (+) True LOC120567879
unassigned_transcript_480 other downstream 66220 1450389 ~ 1459918 (+) True LOC120567883
unassigned_transcript_481 other downstream 79933 1464102 ~ 1464596 (+) True LOC120567882
TU149638 other downstream 120440 1504609 ~ 1505015 (+) True G111112

Expression Profile