Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU149630 |
| length | 408 |
| RNA type | TUCP |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G111106 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053122.1 |
| NCBI id | CM020919.1 |
| chromosome length | 39550354 |
| location | 1440653 ~ 1441147 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0046686 | response to cadmium ion | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0010035 | response to inorganic substance | biological_process |
| GO:0010038 | response to metal ion | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU149623 | lncRNA | upstream | 24088 | 1411929 ~ 1416565 (+) | True | G111101 |
| TU149613 | lncRNA | upstream | 48979 | 1391280 ~ 1391674 (+) | True | G111096 |
| TU149610 | lncRNA | upstream | 55156 | 1385204 ~ 1385497 (+) | True | G111093 |
| TU149609 | lncRNA | upstream | 56484 | 1383940 ~ 1384169 (+) | True | G111092 |
| TU149591 | lncRNA | upstream | 209078 | 1230809 ~ 1231575 (+) | True | G111074 |
| TU149632 | lncRNA | downstream | 10727 | 1451874 ~ 1675945 (+) | False | LOC120568494 |
| TU149649 | lncRNA | downstream | 139496 | 1580643 ~ 1581104 (+) | False | LOC120568490 |
| TU149651 | lncRNA | downstream | 151635 | 1592782 ~ 1597579 (+) | True | G111125 |
| TU149847 | lncRNA | downstream | 268175 | 1709322 ~ 1926604 (+) | False | LOC120567896 |
| XR_005640629.1 | lncRNA | downstream | 325348 | 1766495 ~ 1767066 (+) | True | LOC120567895 |
| XM_039816703.1 | mRNA | upstream | 98302 | 1322214 ~ 1342351 (+) | False | si:ch1073-184j22.1 |
| XM_039817012.1 | mRNA | upstream | 152854 | 1226050 ~ 1287799 (+) | True | pex5lb |
| XM_039815564.1 | mRNA | upstream | 226177 | 1208168 ~ 1214476 (+) | True | si:ch1073-184j22.2 |
| XM_039816050.1 | mRNA | upstream | 240072 | 1152120 ~ 1200581 (+) | True | wdr33 |
| XM_039816047.1 | mRNA | upstream | 347890 | 1070547 ~ 1092763 (+) | True | cdyl |
| XM_039816053.1 | mRNA | downstream | 234595 | 1675742 ~ 1683286 (+) | True | LOC120568494 |
| XM_039816058.1 | mRNA | downstream | 447976 | 1889123 ~ 1890298 (+) | True | LOC120568500 |
| XM_039816059.1 | mRNA | downstream | 456908 | 1898055 ~ 1906798 (+) | True | LOC120568501 |
| XM_039814970.1 | mRNA | downstream | 483004 | 1924151 ~ 1935777 (+) | True | LOC120567896 |
| XM_039816079.1 | mRNA | downstream | 565653 | 2006800 ~ 2008880 (+) | False | LOC120568507 |
| TU149588 | other | upstream | 98356 | 1322242 ~ 1342297 (+) | True | si:ch1073-184j22.1 |
| TU149593 | other | upstream | 104462 | 1242649 ~ 1336191 (+) | True | G111076 |
| TU149501 | other | upstream | 347928 | 1080473 ~ 1092725 (+) | False | cdyl |
| TU149498 | other | upstream | 347928 | 1088597 ~ 1092725 (+) | False | cdyl |
| TU149499 | other | upstream | 347928 | 1088597 ~ 1092725 (+) | False | cdyl |
| unassigned_transcript_479 | other | downstream | 3016 | 1444163 ~ 1444665 (+) | True | LOC120567879 |
| unassigned_transcript_480 | other | downstream | 9242 | 1450389 ~ 1459918 (+) | True | LOC120567883 |
| unassigned_transcript_481 | other | downstream | 22955 | 1464102 ~ 1464596 (+) | True | LOC120567882 |
| TU149638 | other | downstream | 63462 | 1504609 ~ 1505015 (+) | True | G111112 |
| unassigned_transcript_482 | other | downstream | 75906 | 1517053 ~ 1517513 (+) | True | LOC120567880 |
