RNA id: TU149632



Basic Information


Item Value
RNA id TU149632
length 329
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC120568494
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1451874 ~ 1683286 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


atcaacattacctttattcaacttgctgtcactgcagcattgtaTGTTTTCTCTGATGTTTCTCTCCATTCTCACAGGTATGTTAGATTATGCAGCATGGAAAAGTTATGCTTCAATAATATCTGCATGTGAATCATTTGAGCATTGTACAACAAgaaataacagagttatctcttcctttaggtgtcagctgtgaagaactcactccagtccagaaagaagagaacagtttagaaggcagctctgttactctgtcctgtaGATACTCCAAAGGTTCTGCtgattatttcttctggtatCGACAATATTCGGGAAAGCCACCAGAGTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149623 lncRNA upstream 35309 1411929 ~ 1416565 (+) True G111101
TU149613 lncRNA upstream 60200 1391280 ~ 1391674 (+) True G111096
TU149610 lncRNA upstream 66377 1385204 ~ 1385497 (+) True G111093
TU149609 lncRNA upstream 67705 1383940 ~ 1384169 (+) True G111092
TU149591 lncRNA upstream 220299 1230809 ~ 1231575 (+) True G111074
TU149847 lncRNA downstream 33377 1709322 ~ 1926604 (+) False LOC120567896
XR_005640629.1 lncRNA downstream 90550 1766495 ~ 1767066 (+) True LOC120567895
XR_005640628.1 lncRNA downstream 170551 1846496 ~ 1853159 (+) True LOC120567894
TU149889 lncRNA downstream 287763 1963708 ~ 1963929 (+) True G111296
TU149890 lncRNA downstream 292462 1968407 ~ 1968625 (+) True G111297
XM_039816703.1 mRNA upstream 109523 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039817012.1 mRNA upstream 164075 1226050 ~ 1287799 (+) True pex5lb
XM_039815564.1 mRNA upstream 237398 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039816050.1 mRNA upstream 251293 1152120 ~ 1200581 (+) True wdr33
XM_039816047.1 mRNA upstream 359111 1070547 ~ 1092763 (+) True cdyl
XM_039816058.1 mRNA downstream 213178 1889123 ~ 1890298 (+) True LOC120568500
XM_039816059.1 mRNA downstream 222110 1898055 ~ 1906798 (+) True LOC120568501
XM_039814970.1 mRNA downstream 248206 1924151 ~ 1935777 (+) True LOC120567896
XM_039816079.1 mRNA downstream 330855 2006800 ~ 2008880 (+) False LOC120568507
XM_039816087.1 mRNA downstream 478990 2154935 ~ 2158565 (+) True LOC120568513
unassigned_transcript_479 other upstream 7209 1444163 ~ 1444665 (+) True LOC120567879
TU149630 other upstream 10727 1440653 ~ 1441147 (+) True G111106
TU149588 other upstream 109577 1322242 ~ 1342297 (+) True si:ch1073-184j22.1
TU149593 other upstream 115683 1242649 ~ 1336191 (+) True G111076
TU149501 other upstream 359149 1080473 ~ 1092725 (+) False cdyl
unassigned_transcript_492 other downstream 45514 1721459 ~ 1722291 (+) True LOC120568495
unassigned_transcript_499 other downstream 181214 1857159 ~ 1857661 (+) True LOC120567893
unassigned_transcript_500 other downstream 194240 1870185 ~ 1870674 (+) True LOC120567891
unassigned_transcript_501 other downstream 203793 1879738 ~ 1880285 (+) True LOC120567888
TU149900 other downstream 332399 2008344 ~ 2015872 (+) True LOC120568507

Expression Profile