RNA id: TU149817


Basic Information

Item Value
RNA id TU149817
length 2284
RNA type TUCP
GC content 0.45
exon number 3
gene id G111226
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1412956 ~ 1417959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGACGTCCCGTCTCGTCCTCTTAccttttattgttgttattatttgaCTTTTCTTCCACAGTTTGACGTGCCTTCAGTTCCTCTGATCCACTTTCaactttatattatttattgttatttcaaTCATGGGCTCTCAACACTCTTTAGTCGGAGGTTTCCAAATATTATCATGCTTCATTACACTTGTTTCGTGGCCTCGTAATCAGTGGAAACAACTAGAAAACATAAAAATCCTTCAAATGCGTACTGGTTTCAGAGCGTCTGCTTTATCACTAGATTATAAAACAAGCTCTTCAGACACGTTTTAGGTGTCCTGATAAATGATTTTAAAGAACACGACATAACTTAACTTTAAAAAGGACTTCTTCAAGAATCAGAGAAGTAGAGGAAGCACCGCCAATAGCCACGAAGTGCTGTAGAGGTTgagctatttttattttggcGCCCGTGTTATCTGACCCGCCGCTGCAGCAATCTTTTCGGCGTCTTTTCTATTTCTTGCGCGAGCCGCAGGCGAACGGGTCAAGCCAGGCgggtaatcacatacaggaaagCCACAGCACAGCCAGagactttacaaaataaaacacatttcaaaataaaacacccaggttCATGGGTCTGGCCTTCTCAGCTGTGTCTACAGCGGGACACGCAGTCagtcaggcacacacacacagacacacacacacacagacagaccaacagacccagatacacacagacacacacacccagacagacagacagacagacagacacacacacatatatatatatatatacacacacacacacacagacagaccaacagacccagatacacacagacacacacacacagacacacacacccagacagacagacagacagacagacacacacatatatatatacacacacacacacacacccagggaAAGTTTTCCCTCTGggattattgttgttttttggagctgtcacagagctgtgtaacatcagtctactgtcagctgttatcagaggacgcaGGGGAGGGAAACCGGAAATAACAACACAAACTCTCCAAACCAGACTGCCAGCACGCTCACTGACAGACAAGTTATTTCCTGTGTAtctgtagtttaatttaaaagacgTGAGATATGACATTATATAAAGGTCATCATATTATATGATGACTGAAAGAGAGGTTGTTACAGCTCTATACCGGTGGGTTCCTGAGTAATGAGATGAAACACAAATGAGCCAAATACGATCAAACTCGCGGTGCGTGTCCATGTACGCGCTGTTTTCACGGACGGGATCGCCACGCTTCCCAGCATTAAGGCTCCTGCACaccggctgcgtggcgtgagcgtggcgtttcagctgcgtggcgttcTCTACGTCTTTccccaccagaaaggtgtctgacgcggcgctgctgctgctgctagtcttgtctggacacatggatgtttcccataaacataaacataaatatattctgatctgattacagcaaagacaacgtcggcagtattgacggctaaataggctccagaatatttccttctggattcaCTGGTGACCTATTTGAAAAtccataattattatttttaaatgacatttatatatttgcatttatatcaaaacctcgagactttcaaacatcaacatgtcatctattaaatgtattttgcgCTTCCAACACACTGGCATATAgcatgaaaaataggcgtctgttctatttctagcacgcACGTGTttcctgagacgtgcgtgtcaggcaggcagcgtgcacgctctaacctgttaccatggtagcccaaataaaaacggacacgccacgcagctgacacgctcacaccacgcagccagtgtgcaggagagCCTTACACGCTAGTGGGCTCGCCtccagtttctcttcactgaccaatgacaagcaaagaaaacaggctccgccctcctacaaccgcaatggctgcagctgattggacgaacgtgtcacgcgggtctggctgctcccacATGGCGGCTCGTTTAGAATCCGATCTCTTATTTTATGAacatagttcaccgaaacgtgtttctgaaaacatttgaagagagaaataggtcGTGCAGTTGCTTAACGGTCAGTTTAAAAGCGTTTTGTCAGcttctcatttgcataaagttggctggattcaactttatgcaaatgaggagctggCGACTCAACGCCCCACTTCTCCAAACTCCCCGCGAtgctcccagcatgcattgcacggctgctcccaTAGAGATGAACACGCCATTAGAGACCAAACACcgatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640649.1 lncRNA downstream 39331 1372855 ~ 1373625 (-) True LOC120568021
XR_005640650.1 lncRNA downstream 39331 1372979 ~ 1373625 (-) False LOC120568021
TU149812 lncRNA downstream 59350 1353116 ~ 1353606 (-) False dhx9
TU149810 lncRNA downstream 64654 1346507 ~ 1348302 (-) True G111222
TU149802 lncRNA downstream 98229 1307539 ~ 1314727 (-) False mfn1a
TU149826 lncRNA upstream 53140 1471099 ~ 1508883 (-) True G111235
XR_005640626.1 lncRNA upstream 79803 1497762 ~ 1497967 (-) True LOC120567884
XR_005640627.1 lncRNA upstream 106715 1524674 ~ 1526105 (-) True LOC120567885
TU149836 lncRNA upstream 131822 1549781 ~ 1664043 (-) True G111245
TU149845 lncRNA upstream 229214 1647173 ~ 1660408 (-) True G111254
XM_039815197.1 mRNA downstream 3428 1394003 ~ 1409528 (-) False LOC120568022
XM_039816052.1 mRNA downstream 22418 1353022 ~ 1390538 (-) True dhx9
XM_039816051.1 mRNA downstream 98111 1296833 ~ 1314845 (-) False mfn1a
XM_039815563.1 mRNA downstream 207415 1203988 ~ 1205541 (-) True sft2d3
XM_039816345.1 mRNA downstream 276459 1120371 ~ 1136497 (-) False LOC120568681
XM_039814966.1 mRNA upstream 15276 1433235 ~ 1435275 (-) True LOC120567872
XM_039816057.1 mRNA upstream 338662 1756621 ~ 1764145 (-) True LOC120568497
XM_039814972.1 mRNA upstream 923503 2341462 ~ 2405093 (-) False LOC120567903
XM_039816091.1 mRNA upstream 1100892 2518851 ~ 2601477 (-) True lamc1
XM_039816622.1 mRNA upstream 1207879 2625838 ~ 2662765 (-) False smg7
TU149785 other downstream 18754 1391808 ~ 1394202 (-) True LOC120568022
TU149819 other downstream 22469 1386128 ~ 1390487 (-) False dhx9
TU149799 other downstream 98229 1307539 ~ 1314727 (-) False mfn1a
TU149800 other downstream 98229 1307539 ~ 1314727 (-) True mfn1a
TU149801 other downstream 98229 1307539 ~ 1314727 (-) False mfn1a
unassigned_transcript_493 other upstream 325341 1743300 ~ 1743839 (-) True LOC120567890
unassigned_transcript_494 other upstream 369608 1787567 ~ 1788061 (-) True LOC120567892
unassigned_transcript_495 other upstream 378563 1796522 ~ 1798678 (-) True LOC120568498
unassigned_transcript_496 other upstream 402791 1820750 ~ 1821550 (-) True LOC120567887
unassigned_transcript_497 other upstream 414222 1832181 ~ 1833095 (-) True LOC120568499

Expression Profile