RNA id: TU149889


Basic Information

Item Value
RNA id TU149889
length 222
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G111296
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1963708 ~ 1963929 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTAGTTTCACTCATGAAACACAGTTGTGATGAATACTTGAAGAAATGAAACTAATTCAGCATCTGAGTCTCCTCCTACTGACTGCAGAGGTGGCTTCATCACAGAGAACTGTTTGATTCCAGCTGTGAACATCAGACCAAACAACTCACAAAACTTCTTCATCCTGAACATtcaaaaacagcatttcaccTCTGCAGACATGGAAAACCCACTGCAATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149847 lncRNA upstream 37104 1709322 ~ 1926604 (+) False LOC120567896
XR_005640628.1 lncRNA upstream 110549 1846496 ~ 1853159 (+) True LOC120567894
XR_005640629.1 lncRNA upstream 196642 1766495 ~ 1767066 (+) True LOC120567895
TU149632 lncRNA upstream 287763 1451874 ~ 1675945 (+) False LOC120568494
TU149651 lncRNA upstream 366129 1592782 ~ 1597579 (+) True G111125
TU149890 lncRNA downstream 4478 1968407 ~ 1968625 (+) True G111297
TU149896 lncRNA downstream 20012 1983941 ~ 1984348 (+) True G111303
TU149898 lncRNA downstream 23609 1987538 ~ 1988133 (+) True G111305
TU149927 lncRNA downstream 264808 2228737 ~ 2229234 (+) True G111332
TU149930 lncRNA downstream 270998 2234927 ~ 2235354 (+) False LOC120568514
XM_039814970.1 mRNA upstream 27931 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 56910 1898055 ~ 1906798 (+) True LOC120568501
XM_039816058.1 mRNA upstream 73410 1889123 ~ 1890298 (+) True LOC120568500
XM_039816053.1 mRNA upstream 280422 1675742 ~ 1683286 (+) True LOC120568494
XM_039816703.1 mRNA upstream 621357 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039816079.1 mRNA downstream 42871 2006800 ~ 2008880 (+) False LOC120568507
XM_039816087.1 mRNA downstream 191006 2154935 ~ 2158565 (+) True LOC120568513
XM_039816088.1 mRNA downstream 270892 2234821 ~ 2237560 (+) True LOC120568514
XM_039816090.1 mRNA downstream 499744 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 701895 2665824 ~ 2689216 (+) True nmnat2
unassigned_transcript_501 other upstream 83423 1879738 ~ 1880285 (+) True LOC120567888
unassigned_transcript_500 other upstream 93034 1870185 ~ 1870674 (+) True LOC120567891
unassigned_transcript_499 other upstream 106047 1857159 ~ 1857661 (+) True LOC120567893
unassigned_transcript_492 other upstream 241417 1721459 ~ 1722291 (+) True LOC120568495
unassigned_transcript_491 other upstream 289685 1666768 ~ 1674023 (+) True LOC120568493
TU149900 other downstream 44415 2008344 ~ 2015872 (+) True LOC120568507
unassigned_transcript_502 other downstream 80791 2044720 ~ 2049498 (+) True LOC120568512
unassigned_transcript_503 other downstream 126300 2090229 ~ 2090739 (+) True LOC120567898
unassigned_transcript_504 other downstream 194867 2158796 ~ 2161477 (+) True LOC120567901
unassigned_transcript_505 other downstream 215180 2179109 ~ 2179603 (+) True LOC120567900

Expression Profile