RNA id: XM_039816079.1


Basic Information

Item Value
RNA id XM_039816079.1
length 698
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120568507
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2006800 ~ 2015872 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttattcaacatgctgtcactgcagcattgtaTGTTTTCTCTGCTGTTTCTCTCCATTCTAACAGGTGTCAGCTGTGAAGAACTCACTTCAGTAGTGAAAGAagagaacagtttagaaggcagctctgttactctgtcctacagatactcCAAACAAGCAACTGGTGCTGATGAGTTTTATTGGTATCGACAACATCCAGGAAAACACCCAGAGTTCATCATCTCTCATTTAGGAACAGGAACAACAATGAAAAATCCAATCCCCTCGACTGACTctgcagtagAGAGGCTGTTTAGTTTCTCATTCTACTGCAGTGGAAGAACATTGCTCATCTGCTGTCTGTTTGGCTTTAACAACTCCAAAGACATGTTGCTTTACctgtttttacttttctctCCCTTTATAGCCCTGAGTTCCATGAACAGCATAAAGCCAGAAAGTACTGAAGAACATGTTGCAGAGGGCACGAACATCAACCTGACCTGTACATATGAGAGTACTATCTACAATATTCAGTGGTACCGACAATACCAGAGATCCAGACCAGAGTTCCTGCTCTACATCACAGAGGGAGGATCGATTCATCGAACTGGTTCTGATTTCCAAGCTCacattgacaaaacaaaaaaacatgttaaactggaGATCATCTCAGCTAaggtgtctgactctgctgtgtactactgtgctctgacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149898 lncRNA upstream 18667 1987538 ~ 1988133 (+) True G111305
TU149896 lncRNA upstream 22452 1983941 ~ 1984348 (+) True G111303
TU149890 lncRNA upstream 38175 1968407 ~ 1968625 (+) True G111297
TU149889 lncRNA upstream 42871 1963708 ~ 1963929 (+) True G111296
TU149847 lncRNA upstream 80196 1709322 ~ 1926604 (+) False LOC120567896
TU149927 lncRNA downstream 219857 2228737 ~ 2229234 (+) True G111332
TU149930 lncRNA downstream 226047 2234927 ~ 2235354 (+) False LOC120568514
TU149953 lncRNA downstream 233013 2241893 ~ 2242215 (+) True G111353
TU149955 lncRNA downstream 237001 2245881 ~ 2246201 (+) True G111355
TU149957 lncRNA downstream 251259 2260139 ~ 2260416 (+) True G111357
XM_039814970.1 mRNA upstream 71023 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 100002 1898055 ~ 1906798 (+) True LOC120568501
XM_039816058.1 mRNA upstream 116502 1889123 ~ 1890298 (+) True LOC120568500
XM_039816053.1 mRNA upstream 323514 1675742 ~ 1683286 (+) True LOC120568494
XM_039816703.1 mRNA upstream 664449 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039816087.1 mRNA downstream 146055 2154935 ~ 2158565 (+) True LOC120568513
XM_039816088.1 mRNA downstream 225941 2234821 ~ 2237560 (+) True LOC120568514
XM_039816090.1 mRNA downstream 454793 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 656944 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 723726 2732606 ~ 2733898 (+) True LOC120568826
unassigned_transcript_501 other upstream 126515 1879738 ~ 1880285 (+) True LOC120567888
unassigned_transcript_500 other upstream 136126 1870185 ~ 1870674 (+) True LOC120567891
unassigned_transcript_499 other upstream 149139 1857159 ~ 1857661 (+) True LOC120567893
unassigned_transcript_492 other upstream 284509 1721459 ~ 1722291 (+) True LOC120568495
unassigned_transcript_491 other upstream 332777 1666768 ~ 1674023 (+) True LOC120568493
unassigned_transcript_502 other downstream 35840 2044720 ~ 2049498 (+) True LOC120568512
unassigned_transcript_503 other downstream 81349 2090229 ~ 2090739 (+) True LOC120567898
unassigned_transcript_504 other downstream 149916 2158796 ~ 2161477 (+) True LOC120567901
unassigned_transcript_505 other downstream 170229 2179109 ~ 2179603 (+) True LOC120567900
unassigned_transcript_506 other downstream 212568 2221448 ~ 2221891 (+) True LOC120567899

Expression Profile