RNA id: TU149953


Basic Information

Item Value
RNA id TU149953
length 323
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G111353
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2241893 ~ 2242215 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgggtttcctcaggagggtggctggcgtctcccttagagatagggtgagaagctcggtcatccgtgaggagctcggagtagagccgctgctcctttgtgtCGAAAgcagccagttgaggtggttcgggcatctggtaaggatgccccctgggcgcctccctagggaggtgttccaggcacgtccagctgggaggaggcctcggggaagacccaggactaggtggagggattatatctccaacctggcctgggaatgcctcgggatcccccagtcggagctggttaatgttgctcgggaaagggaagtttgtggtcccctgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149930 lncRNA upstream 6539 2234927 ~ 2235354 (+) False LOC120568514
TU149927 lncRNA upstream 12659 2228737 ~ 2229234 (+) True G111332
TU149898 lncRNA upstream 253760 1987538 ~ 1988133 (+) True G111305
TU149896 lncRNA upstream 257545 1983941 ~ 1984348 (+) True G111303
TU149890 lncRNA upstream 273268 1968407 ~ 1968625 (+) True G111297
TU149955 lncRNA downstream 3666 2245881 ~ 2246201 (+) True G111355
TU149957 lncRNA downstream 17924 2260139 ~ 2260416 (+) True G111357
TU149970 lncRNA downstream 96176 2338391 ~ 2339419 (+) True G111368
TU149978 lncRNA downstream 171887 2414102 ~ 2415316 (+) True G111371
TU149976 lncRNA downstream 173149 2415364 ~ 2435479 (+) True G111370
XM_039816088.1 mRNA upstream 4333 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 83328 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 233013 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 306116 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 335095 1898055 ~ 1906798 (+) True LOC120568501
XM_039816090.1 mRNA downstream 221458 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 423609 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 490391 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 507639 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 545564 2787779 ~ 2826854 (+) True rasal2
unassigned_transcript_506 other upstream 20002 2221448 ~ 2221891 (+) True LOC120567899
unassigned_transcript_505 other upstream 62290 2179109 ~ 2179603 (+) True LOC120567900
unassigned_transcript_504 other upstream 80416 2158796 ~ 2161477 (+) True LOC120567901
unassigned_transcript_503 other upstream 151154 2090229 ~ 2090739 (+) True LOC120567898
unassigned_transcript_502 other upstream 192395 2044720 ~ 2049498 (+) True LOC120568512
TU149958 other downstream 29424 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_507 other downstream 40393 2282608 ~ 2299880 (+) True LOC120568515
unassigned_transcript_508 other downstream 197494 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other downstream 197521 2439736 ~ 2440198 (+) False LOC120568516
TU150017 other downstream 329973 2572188 ~ 2636043 (+) True G111404

Expression Profile