RNA id: TU149958



Basic Information


Item Value
RNA id TU149958
length 289
RNA type TUCP
GC content 0.45
exon number 1
gene id G111358
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2271639 ~ 2271927 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGGGTTCCATGAACAGCATAAAGCCAGGAAGTACTGAAGAACATGTTGCAGAGGGCAGGAACATTAACCTGACCTGTACATATGAGGGTGTTATCAACAATATCCAGTGGTACCGACAATACCAGAGATCCAGACCAGAGTTCCTGCTCTTCATCACAGAGGAAGGGTTCATTCAAACAACTGGTTCTGATTTCTCAGCTCACATTGACAAGTCaaagaaacatgttaaactggaGATCATCTCAGCTAaggtgtctgactctgctgtgtactactgtgctctgcagcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149957 lncRNA upstream 11223 2260139 ~ 2260416 (+) True G111357
TU149955 lncRNA upstream 25438 2245881 ~ 2246201 (+) True G111355
TU149953 lncRNA upstream 29424 2241893 ~ 2242215 (+) True G111353
TU149930 lncRNA upstream 36285 2234927 ~ 2235354 (+) False LOC120568514
TU149927 lncRNA upstream 42405 2228737 ~ 2229234 (+) True G111332
TU149970 lncRNA downstream 66464 2338391 ~ 2339419 (+) True G111368
TU149978 lncRNA downstream 142175 2414102 ~ 2415316 (+) True G111371
TU149976 lncRNA downstream 143437 2415364 ~ 2435479 (+) True G111370
TU149990 lncRNA downstream 161212 2433139 ~ 2622501 (+) True G111382
XR_005640813.1 lncRNA downstream 202037 2473964 ~ 2474785 (+) True LOC120568944
XM_039816088.1 mRNA upstream 34079 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 113074 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 262759 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 335862 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 364841 1898055 ~ 1906798 (+) True LOC120568501
XM_039816090.1 mRNA downstream 191746 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 393897 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 460679 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 477927 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 515852 2787779 ~ 2826854 (+) True rasal2
unassigned_transcript_506 other upstream 49748 2221448 ~ 2221891 (+) True LOC120567899
unassigned_transcript_505 other upstream 92036 2179109 ~ 2179603 (+) True LOC120567900
unassigned_transcript_504 other upstream 110162 2158796 ~ 2161477 (+) True LOC120567901
unassigned_transcript_503 other upstream 180900 2090229 ~ 2090739 (+) True LOC120567898
unassigned_transcript_502 other upstream 222141 2044720 ~ 2049498 (+) True LOC120568512
unassigned_transcript_507 other downstream 10681 2282608 ~ 2299880 (+) True LOC120568515
unassigned_transcript_508 other downstream 167782 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other downstream 167809 2439736 ~ 2440198 (+) False LOC120568516
TU150017 other downstream 300261 2572188 ~ 2636043 (+) True G111404
TU149996 other downstream 305194 2577121 ~ 2577931 (+) True G111388

Expression Profile