RNA id: TU149970


Basic Information

Item Value
RNA id TU149970
length 231
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G111368
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2338391 ~ 2339419 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacagacagacagacagacacacagacacagacagacagacagacagacacacacacacacacacacagacacacacagacagacagacagacagacacacacacacacacacacacacacacagacacacagacagacagacagacagacacacacacacacacacacacacagacagacagacagacacacacacacacacacacacacacacacacacagagacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149957 lncRNA upstream 77975 2260139 ~ 2260416 (+) True G111357
TU149955 lncRNA upstream 92190 2245881 ~ 2246201 (+) True G111355
TU149953 lncRNA upstream 96176 2241893 ~ 2242215 (+) True G111353
TU149930 lncRNA upstream 103037 2234927 ~ 2235354 (+) False LOC120568514
TU149927 lncRNA upstream 109157 2228737 ~ 2229234 (+) True G111332
TU149978 lncRNA downstream 74683 2414102 ~ 2415316 (+) True G111371
TU149976 lncRNA downstream 75945 2415364 ~ 2435479 (+) True G111370
TU149990 lncRNA downstream 93720 2433139 ~ 2622501 (+) True G111382
XR_005640813.1 lncRNA downstream 134545 2473964 ~ 2474785 (+) True LOC120568944
TU149999 lncRNA downstream 162474 2501893 ~ 2554775 (+) True G111389
XM_039816088.1 mRNA upstream 100831 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 179826 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 329511 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 402614 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 431593 1898055 ~ 1906798 (+) True LOC120568501
XM_039816090.1 mRNA downstream 124254 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 326405 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 393187 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 410435 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 448360 2787779 ~ 2826854 (+) True rasal2
unassigned_transcript_507 other upstream 38511 2282608 ~ 2299880 (+) True LOC120568515
TU149958 other upstream 66464 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_506 other upstream 116500 2221448 ~ 2221891 (+) True LOC120567899
unassigned_transcript_505 other upstream 158788 2179109 ~ 2179603 (+) True LOC120567900
unassigned_transcript_504 other upstream 176914 2158796 ~ 2161477 (+) True LOC120567901
unassigned_transcript_508 other downstream 100290 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other downstream 100317 2439736 ~ 2440198 (+) False LOC120568516
TU150017 other downstream 232769 2572188 ~ 2636043 (+) True G111404
TU149996 other downstream 237702 2577121 ~ 2577931 (+) True G111388
TU150031 other downstream 276158 2615577 ~ 2636043 (+) False G111404

Expression Profile