RNA id: TU149991


Basic Information

Item Value
RNA id TU149991
length 376
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC120568516
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2439709 ~ 2440343 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctcttcctctctctcctcccctctcactGCAGACATGAAACACTGGCTGACAAACATCCTGATTCTGACTCTCTGGCTAGAGTGTAAAGGAGAAGACAGAGTGAACCAGCCAACACGAGATGTCATTACTACTGAAGGAGAGACAGTTACTCTTGGCTGTACATTTGAGACAACTGATCCAAGTCCCACTTTGTTTTGGTACAAACAAGAAGAAAATGATTACCCAAAGATGATGCTGCGACGCTTCTCTGTAAAAACTGATAATTCtaaagagcaagagagaatTGATGCAACAATCAAGGATAAGTCAGTTCCTCtgaagatccagaagcttcagctgtctgactctgctgtgtactactgtgctatgaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149976 lncRNA upstream 4257 2415364 ~ 2435479 (+) True G111370
TU149978 lncRNA upstream 24420 2414102 ~ 2415316 (+) True G111371
TU149970 lncRNA upstream 100317 2338391 ~ 2339419 (+) True G111368
TU149957 lncRNA upstream 179320 2260139 ~ 2260416 (+) True G111357
TU149955 lncRNA upstream 193535 2245881 ~ 2246201 (+) True G111355
XR_005640813.1 lncRNA downstream 33766 2473964 ~ 2474785 (+) True LOC120568944
TU149999 lncRNA downstream 61695 2501893 ~ 2554775 (+) True G111389
TU150002 lncRNA downstream 73956 2514154 ~ 2519456 (+) True G111392
TU150012 lncRNA downstream 115193 2555391 ~ 2556012 (+) True G111401
TU150028 lncRNA downstream 124937 2565135 ~ 2625329 (+) False G111404
XM_039816088.1 mRNA upstream 202176 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 281171 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 430856 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 503959 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 532938 1898055 ~ 1906798 (+) True LOC120568501
XM_039816090.1 mRNA downstream 23475 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 225626 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 292408 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 309656 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 347581 2787779 ~ 2826854 (+) True rasal2
unassigned_transcript_507 other upstream 139856 2282608 ~ 2299880 (+) True LOC120568515
TU149958 other upstream 167809 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_506 other upstream 217845 2221448 ~ 2221891 (+) True LOC120567899
unassigned_transcript_505 other upstream 260133 2179109 ~ 2179603 (+) True LOC120567900
unassigned_transcript_504 other upstream 278259 2158796 ~ 2161477 (+) True LOC120567901
TU150017 other downstream 131990 2572188 ~ 2636043 (+) True G111404
TU149996 other downstream 136923 2577121 ~ 2577931 (+) True G111388
TU150031 other downstream 175379 2615577 ~ 2636043 (+) False G111404
TU150110 other downstream 376746 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 497951 2938149 ~ 2940848 (+) True G111486

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU829628 True 520 TUCP 0.45 2 NC_048572.1 61467353 ~ 61468047 (+)