RNA id: TU149996


Basic Information

Item Value
RNA id TU149996
length 733
RNA type TUCP
GC content 0.52
exon number 3
gene id G111388
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2577121 ~ 2577931 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTACATTAACTTTAATTAAGCCGAGCTACAAAGAGAGCCATGTGAAAGTGCGACTGGAAGTTGTTTTTCTCTTGCTGAGATGATTCTGCAGAGCCACTGTTCGCCTCATGTGGAGCTTGGCTGTGATTGGTTAGAGGGCATGCACAGTGTGTGTtgttctcctatcccagaatgcaccagTGGTGCAGGCAGAGGTGCCGGGTGTTACCTGCAGCCGGCCTCGGTCAGGCTGTGGAATCCTGGCTGGCAGCGGTCGCACTTCTCTCCGCCCACGCCGGGTTTACACGCACACGCTCCTCTGCTGTCACACTGGGGAGACTCGgagcctgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgacacacacacacacacacacacacacacacacacacacagacagacacacacacacacacacagacacacacacacagacacacacacacacacacacacagagacacacacacacacacacacagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacacacacacacacagagagacacacacacacacacaaacacacacacacacacacacagagacacacacacacacagagacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150012 lncRNA upstream 21109 2555391 ~ 2556012 (+) True G111401
TU149999 lncRNA upstream 22346 2501893 ~ 2554775 (+) True G111389
TU150002 lncRNA upstream 57665 2514154 ~ 2519456 (+) True G111392
XR_005640813.1 lncRNA upstream 102336 2473964 ~ 2474785 (+) True LOC120568944
TU149976 lncRNA upstream 141642 2415364 ~ 2435479 (+) True G111370
TU150029 lncRNA downstream 1922 2579853 ~ 2636043 (+) False G111404
TU150021 lncRNA downstream 5971 2583902 ~ 2618703 (+) False G111404
TU150060 lncRNA downstream 76942 2654873 ~ 2655433 (+) True G111428
TU150064 lncRNA downstream 83297 2661228 ~ 2808845 (+) False G111431
TU150065 lncRNA downstream 83297 2661228 ~ 2808845 (+) True G111431
XM_039816090.1 mRNA upstream 112281 2463673 ~ 2464840 (+) True LOC120568517
XM_039816088.1 mRNA upstream 339561 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 418556 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 568241 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 641344 1924151 ~ 1935777 (+) True LOC120567896
XM_039816589.1 mRNA downstream 87893 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 154675 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 171923 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 209848 2787779 ~ 2826854 (+) True rasal2
XM_039815924.1 mRNA downstream 720933 3298864 ~ 3304226 (+) True ptmab
unassigned_transcript_508 other upstream 136778 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other upstream 136923 2439736 ~ 2440198 (+) False LOC120568516
unassigned_transcript_507 other upstream 277241 2282608 ~ 2299880 (+) True LOC120568515
TU149958 other upstream 305194 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_506 other upstream 355230 2221448 ~ 2221891 (+) True LOC120567899
TU150031 other downstream 37646 2615577 ~ 2636043 (+) False G111404
TU150110 other downstream 239013 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 360218 2938149 ~ 2940848 (+) True G111486
TU150165 other downstream 439027 3016958 ~ 3075901 (+) True G111494
TU150153 other downstream 442662 3020593 ~ 3021258 (+) True G111484

Expression Profile