RNA id: TU150060


Basic Information

Item Value
RNA id TU150060
length 535
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G111428
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2654873 ~ 2655433 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatcttcaccagactccatgtaaataatcaggacttttaggctgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccacatgtaaccaaaccagagtggtgattgttggaacagtggaaagatgaaccaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150022 lncRNA upstream 18830 2571176 ~ 2636043 (+) False G111404
TU150029 lncRNA upstream 18830 2579853 ~ 2636043 (+) False G111404
TU150028 lncRNA upstream 29544 2565135 ~ 2625329 (+) False G111404
TU149990 lncRNA upstream 32372 2433139 ~ 2622501 (+) True G111382
TU150032 lncRNA upstream 36170 2565686 ~ 2618703 (+) False G111404
TU150064 lncRNA downstream 5795 2661228 ~ 2808845 (+) False G111431
TU150065 lncRNA downstream 5795 2661228 ~ 2808845 (+) True G111431
TU150063 lncRNA downstream 5945 2661378 ~ 2808845 (+) False G111431
TU150113 lncRNA downstream 82183 2737616 ~ 2742300 (+) True G111455
TU150115 lncRNA downstream 86991 2742424 ~ 2750937 (+) False LOC120568825
XM_039816090.1 mRNA upstream 190033 2463673 ~ 2464840 (+) True LOC120568517
XM_039816088.1 mRNA upstream 417313 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 496308 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 645993 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 719096 1924151 ~ 1935777 (+) True LOC120567896
XM_039816589.1 mRNA downstream 10391 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 77173 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 94421 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 132346 2787779 ~ 2826854 (+) True rasal2
XM_039815924.1 mRNA downstream 643431 3298864 ~ 3304226 (+) True ptmab
TU150017 other upstream 18830 2572188 ~ 2636043 (+) True G111404
TU150031 other upstream 18830 2615577 ~ 2636043 (+) False G111404
TU149996 other upstream 76942 2577121 ~ 2577931 (+) True G111388
unassigned_transcript_508 other upstream 214530 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other upstream 214675 2439736 ~ 2440198 (+) False LOC120568516
TU150110 other downstream 161511 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 282716 2938149 ~ 2940848 (+) True G111486
TU150165 other downstream 361525 3016958 ~ 3075901 (+) True G111494
TU150153 other downstream 365160 3020593 ~ 3021258 (+) True G111484
TU150236 other downstream 732661 3388094 ~ 3399183 (+) False LOC120567769

Expression Profile