RNA id: TU150065


Basic Information

Item Value
RNA id TU150065
length 321
lncRNA type read_through
GC content 0.49
exon number 6
gene id G111431
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2661228 ~ 2808845 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagacacacacacacacacacactcagacacacacacagacacacacacacacagacacacacacacacacacacacagagacacacacacacacagagacacacacagacacacacagagacacacagacacagagacacacacacacacacacacacacacacagagacacacagacacagagacacacacacacacacaacacacagacagagacacacacacacacagacacacacacacacagagacacacacacatacacacacacacacacacagagacacacagacacagagacacacaaacacagacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150060 lncRNA upstream 5795 2654873 ~ 2655433 (+) True G111428
TU150022 lncRNA upstream 25185 2571176 ~ 2636043 (+) False G111404
TU150029 lncRNA upstream 25185 2579853 ~ 2636043 (+) False G111404
TU150028 lncRNA upstream 35899 2565135 ~ 2625329 (+) False G111404
TU150032 lncRNA upstream 42525 2565686 ~ 2618703 (+) False G111404
TU150094 lncRNA downstream 34858 2843703 ~ 2887920 (+) False G111448
TU150095 lncRNA downstream 34858 2843703 ~ 2878602 (+) False G111448
TU150086 lncRNA downstream 41080 2849925 ~ 2889240 (+) False G111448
TU150090 lncRNA downstream 41080 2849925 ~ 2887920 (+) False G111448
TU150091 lncRNA downstream 41080 2849925 ~ 2869618 (+) True G111448
XM_039816090.1 mRNA upstream 196388 2463673 ~ 2464840 (+) True LOC120568517
XM_039816088.1 mRNA upstream 423668 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 502663 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 652348 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 725451 1924151 ~ 1935777 (+) True LOC120567896
XM_039815924.1 mRNA downstream 490019 3298864 ~ 3304226 (+) True ptmab
XM_039814780.1 mRNA downstream 579209 3388054 ~ 3398106 (+) True LOC120567769
XM_039815755.1 mRNA downstream 682744 3491589 ~ 3506128 (+) True LOC120568331
XM_039815754.1 mRNA downstream 702784 3511629 ~ 3525115 (+) False LOC120568327
XM_039816094.1 mRNA downstream 732142 3540987 ~ 3552017 (+) True LOC120568521
TU150017 other upstream 25185 2572188 ~ 2636043 (+) True G111404
TU150031 other upstream 25185 2615577 ~ 2636043 (+) False G111404
TU149996 other upstream 83297 2577121 ~ 2577931 (+) True G111388
unassigned_transcript_508 other upstream 220885 2439709 ~ 2440343 (+) True LOC120568516
TU150110 other downstream 8099 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 129304 2938149 ~ 2940848 (+) True G111486
TU150165 other downstream 208113 3016958 ~ 3075901 (+) True G111494
TU150153 other downstream 211748 3020593 ~ 3021258 (+) True G111484
TU150236 other downstream 579249 3388094 ~ 3399183 (+) False LOC120567769

Expression Profile