RNA id: TU150106


Basic Information

Item Value
RNA id TU150106
length 1322
lncRNA type sense_over
GC content 0.52
exon number 2
gene id rasal2
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2787779 ~ 2826854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAACAAAGAGGAGTACATGGCGTTCATGAACGACTTCCTGGAGCACGAGTGGGCGGGGATGATGCGTTTCCTGTCGGAGATCTCCAACCCGGAGACGCTGTCCAGCACGCCGGGCTACGAGGGCTACATCGACCTCGGCCGCGAGCTGTCGGTGCTGCACGCACAGCTCTGGGAGGTGGTCTCGCAGCTGGACAAGGTACGCTGGGggctggggtgtgtgtgtgtgtgtgagagtgtgtgtggagagtgtgtgtgagagtgtgtgtgtctgtgtgagtgtgtgtgtgtcggtgctGCACGCACAGCTCTGGGAGGTGGTCTCAGGGAGTTGACAAGGTAATgcgtggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgagagtgtgtgtgtgagagtgtgtgtgtctgtgtgtctctgtgtatgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgcgcatgtgagtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgcatgtctgtgtgtgtgtgcatgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtctgtgtgtgtgtgcatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtctgtgtgtgtgtgcatgtctctgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgcagagctgTAATGTACCTCCTTTATAGAGCCTGTTTGCACCTGTCAGGGGGGTACTTggctaaaaaaatatttcaaaggggggggtacattattgtaaaaaggtttgagaaccactgcggTAAAGAATGAATGCTCAGTGATTGGtccgtgctgtgtgtgtgtgatgtgaacATCTGCTCAGTGATTGGtccgtgctgtgtgtgtgtgatgtgaacATCTGCTCAGTGATTGGtccgtgctgtgtgtgtgtgatgtgaacATCTGATGACATAAATAACACGAGACATCATAACACCAGCAGCAAAGATCACTCCATCGCTGTTCGTTTAACCATTTTTGACCCCACGCTGCGTGGCTGAACTTCACAGCATGGCCTGAACTCACCCTCCTCACCCCTCCCTCACCCCTCCCTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150119 lncRNA upstream 15545 2768804 ~ 2772238 (+) True G111461
TU150115 lncRNA upstream 36846 2742424 ~ 2750937 (+) False LOC120568825
TU150113 lncRNA upstream 45483 2737616 ~ 2742300 (+) True G111455
TU150060 lncRNA upstream 132350 2654873 ~ 2655433 (+) True G111428
TU150022 lncRNA upstream 151740 2571176 ~ 2636043 (+) False G111404
TU150124 lncRNA downstream 4460 2793584 ~ 2793985 (+) True G111464
XR_005640741.1 lncRNA downstream 7964 2797088 ~ 2798606 (+) True LOC120568650
XR_005640740.1 lncRNA downstream 7964 2797088 ~ 2798606 (+) False LOC120568650
TU150066 lncRNA downstream 17061 2806185 ~ 2808845 (+) False G111431
TU150067 lncRNA downstream 17137 2806261 ~ 2808845 (+) False G111431
XM_039816548.1 mRNA upstream 36211 2749854 ~ 2751572 (+) True LOC120568825
XM_039816549.1 mRNA upstream 53885 2732606 ~ 2733898 (+) True LOC120568826
XM_039816589.1 mRNA upstream 98567 2665824 ~ 2689216 (+) True nmnat2
XM_039816090.1 mRNA upstream 322943 2463673 ~ 2464840 (+) True LOC120568517
XM_039816088.1 mRNA upstream 550223 2234821 ~ 2237560 (+) True LOC120568514
XM_039815924.1 mRNA downstream 509740 3298864 ~ 3304226 (+) True ptmab
XM_039814780.1 mRNA downstream 598930 3388054 ~ 3398106 (+) True LOC120567769
XM_039815755.1 mRNA downstream 702465 3491589 ~ 3506128 (+) True LOC120568331
XM_039815754.1 mRNA downstream 722505 3511629 ~ 3525115 (+) False LOC120568327
XM_039816094.1 mRNA downstream 751863 3540987 ~ 3552017 (+) True LOC120568521
TU150017 other upstream 151740 2572188 ~ 2636043 (+) True G111404
TU150031 other upstream 151740 2615577 ~ 2636043 (+) False G111404
TU149996 other upstream 209852 2577121 ~ 2577931 (+) True G111388
unassigned_transcript_508 other upstream 347440 2439709 ~ 2440343 (+) True LOC120568516
TU150110 other downstream 27820 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 149025 2938149 ~ 2940848 (+) True G111486
TU150165 other downstream 227834 3016958 ~ 3075901 (+) True G111494
TU150153 other downstream 231469 3020593 ~ 3021258 (+) True G111484
TU150236 other downstream 598970 3388094 ~ 3399183 (+) False LOC120567769

Expression Profile