RNA id: TU150113


Basic Information

Item Value
RNA id TU150113
length 212
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G111455
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2737616 ~ 2742300 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagcttatctgttatctctgctctgtggatgaacataaaggccacgacacagtctctgctgcagcagaaaggactgagaggcagaaaaagcTTGAGGGGAGTCGACtaaacatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggaggccatcaatcgctctgctgataaagcagtggaggacagcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150023 lncRNA upstream 69678 2565867 ~ 2667938 (+) False G111404
TU150060 lncRNA upstream 82183 2654873 ~ 2655433 (+) True G111428
TU150022 lncRNA upstream 101573 2571176 ~ 2636043 (+) False G111404
TU150029 lncRNA upstream 101573 2579853 ~ 2636043 (+) False G111404
TU150028 lncRNA upstream 112287 2565135 ~ 2625329 (+) False G111404
TU150115 lncRNA downstream 124 2742424 ~ 2750937 (+) False LOC120568825
TU150119 lncRNA downstream 26504 2768804 ~ 2772238 (+) True G111461
TU150106 lncRNA downstream 45483 2787783 ~ 2789124 (+) False rasal2
TU150124 lncRNA downstream 51284 2793584 ~ 2793985 (+) True G111464
XR_005640741.1 lncRNA downstream 54788 2797088 ~ 2798606 (+) True LOC120568650
XM_039816549.1 mRNA upstream 3718 2732606 ~ 2733898 (+) True LOC120568826
XM_039816589.1 mRNA upstream 48400 2665824 ~ 2689216 (+) True nmnat2
XM_039816090.1 mRNA upstream 272776 2463673 ~ 2464840 (+) True LOC120568517
XM_039816088.1 mRNA upstream 500056 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 579051 2154935 ~ 2158565 (+) True LOC120568513
XM_039816548.1 mRNA downstream 7554 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 45479 2787779 ~ 2826854 (+) True rasal2
XM_039815924.1 mRNA downstream 556564 3298864 ~ 3304226 (+) True ptmab
XM_039814780.1 mRNA downstream 645754 3388054 ~ 3398106 (+) True LOC120567769
XM_039815755.1 mRNA downstream 749289 3491589 ~ 3506128 (+) True LOC120568331
TU150017 other upstream 101573 2572188 ~ 2636043 (+) True G111404
TU150031 other upstream 101573 2615577 ~ 2636043 (+) False G111404
TU149996 other upstream 159685 2577121 ~ 2577931 (+) True G111388
unassigned_transcript_508 other upstream 297273 2439709 ~ 2440343 (+) True LOC120568516
TU150110 other downstream 74644 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 195849 2938149 ~ 2940848 (+) True G111486
TU150165 other downstream 274658 3016958 ~ 3075901 (+) True G111494
TU150153 other downstream 278293 3020593 ~ 3021258 (+) True G111484
TU150236 other downstream 645794 3388094 ~ 3399183 (+) False LOC120567769

Expression Profile